View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3925_low_8 (Length: 360)
Name: NF3925_low_8
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3925_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 5112638 - 5112959
Alignment:
| Q |
20 |
ggagtgttactaaatttggattagtagttgaatttttgtccaaattgttgcaattgagaactccaactccatgatttggaagagggagttgaggaagtga |
119 |
Q |
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| T |
5112638 |
ggagtgttactaaatttggattagtagttgaatttttgt---------tgcaattgagaactccaactccatgatttggaagagggagttgaggaagtga |
5112728 |
T |
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| Q |
120 |
agaaggaggaacaaaattaccttgtaaagtaaggttttttattggagatgttacatgcaaaggttgacaaaaacctaagacatgtgttttttgtcttttc |
219 |
Q |
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| T |
5112729 |
agaaggaggaacaaaattaccttgtaaagtaaggttttttattggagatgttacatgcaaaggttgacaaaaacctaagacatgtgttttttgtcttttc |
5112828 |
T |
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| Q |
220 |
aaagaagagggtagtgaaataggagctctacctctctttcttgtccttgttggtcttgcttgtaactgtggccaaagattcctaaggtaaggagattgtt |
319 |
Q |
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| T |
5112829 |
aaagaagagggtagtgaaataggagctctacctctctttcttgtccttgttggtcttgcttgtaactgtggccaaagattcctaaggtaaggagattgtt |
5112928 |
T |
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| Q |
320 |
tgatcttttgagaaagtgagtttgatgatga |
350 |
Q |
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| T |
5112929 |
tgatcttttgagaaagtgagtttgatgatga |
5112959 |
T |
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