View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3926_high_1 (Length: 610)
Name: NF3926_high_1
Description: NF3926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3926_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 37588321 - 37587874
Alignment:
| Q |
8 |
tgagatgaaaaactatatgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaataacagtgtatttcctcctgtaaaaagtt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
37588321 |
tgagatgaaaaactatatgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaataacagtgtatttcttccggtaaaaagtt |
37588222 |
T |
|
| Q |
108 |
gaactcagcataaaataaaagaagggtaagagtaaatcaaaggcaatatagaagttgtttctatcatcaaaggcaaatctcaaaggataaaaaacacaat |
207 |
Q |
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| T |
37588221 |
aaactcaccataaaataaaagaagggtaagagtaaatcaaaggcaatatagaagttgtttctatcatcaaaggcaaatctcaaaggataaaaaacacaat |
37588122 |
T |
|
| Q |
208 |
gaagttaggtttctagcaaaagagt-gagtcaaaaaatactagtattccaaatttggccgaagagaaggaaaatcgttcaaaaagtattagttagtcata |
306 |
Q |
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| T |
37588121 |
gaagttaggtttctagcaaaagattagagtcaaaaaatactagtattccagatttggccgaaaagaaggaaaatcgttcaaaaagtattagttagtcata |
37588022 |
T |
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| Q |
307 |
aaacaaggggagtagagttttctaactcaaaatcagtatacggatatcgctagcaattaccaatgtatggagaaagtaatggtatctaattggaaatcaa |
406 |
Q |
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| T |
37588021 |
aaacaagcggagtagagttttctaactcaaaatcagtatatggatatcgctagcaattaccaatgtatggagaaagtaatggtatctaattggaaatcaa |
37587922 |
T |
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| Q |
407 |
gttctaactcaaaatcagtaacgtatctaattggaaacatgtgaaagt |
454 |
Q |
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| T |
37587921 |
gttctaactcaaaatcagtaacgtatctaattggaaacatgtgaaagt |
37587874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 483 - 589
Target Start/End: Complemental strand, 37587873 - 37587767
Alignment:
| Q |
483 |
ccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagtgtcatccaggaaataatgt |
582 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37587873 |
ccaaagaagagtttcctttcattgtcacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagtgtcatccaggaaataatgt |
37587774 |
T |
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| Q |
583 |
tagcaga |
589 |
Q |
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||||||| |
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| T |
37587773 |
tagcaga |
37587767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 589
Target Start/End: Complemental strand, 27006110 - 27005985
Alignment:
| Q |
464 |
ctagcaaacaagacatcgcccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagt |
563 |
Q |
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| T |
27006110 |
ctagcaaacaagacatcgcccagagaggagtttcctatcacagtcacggggacgaaaatgaggcggagctgtaatttttctcagtgatggccttgaaaat |
27006011 |
T |
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| Q |
564 |
gtcatccaggaaataatgttagcaga |
589 |
Q |
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| T |
27006010 |
atcatccaggaaataacattagcaga |
27005985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 33722065 - 33722010
Alignment:
| Q |
24 |
atgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaata |
80 |
Q |
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| T |
33722065 |
atgttcacaatagatagaaatctgaca-taaaagaaaaatagcagaaactatcaata |
33722010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 37583254 - 37583191
Alignment:
| Q |
239 |
aaaaatactagtattccaaatttggccgaagagaaggaaaatcgttcaaaaagtattagttagt |
302 |
Q |
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|||||||||||||||||||||||||| || |||||||||||| ||||| ||||||||| |||| |
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| T |
37583254 |
aaaaatactagtattccaaatttggcagacaagaaggaaaatctttcaataagtattagctagt |
37583191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 576
Target Start/End: Complemental strand, 36811365 - 36811253
Alignment:
| Q |
464 |
ctagcaaacaagacatcgcccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagt |
563 |
Q |
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||||||||||||||||| || ||||| | |||| || ||||||| ||| ||| | |||||||| ||||| | || |||| | ||||||||||| ||| | |
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| T |
36811365 |
ctagcaaacaagacatctcctaaagaggggtttcctatcattgtcacggggacggaaatgaggtggagccgctacttttttcaatgatggccttgaaaat |
36811266 |
T |
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| Q |
564 |
gtcatccaggaaa |
576 |
Q |
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|||||||||||| |
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| T |
36811265 |
atcatccaggaaa |
36811253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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