View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3926_high_9 (Length: 238)

Name: NF3926_high_9
Description: NF3926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3926_high_9
NF3926_high_9
[»] chr7 (15 HSPs)
chr7 (1-217)||(45758343-45758561)
chr7 (164-215)||(43346777-43346828)
chr7 (165-223)||(27028331-27028389)
chr7 (163-223)||(13095910-13095970)
chr7 (163-223)||(22993364-22993424)
chr7 (163-223)||(23658231-23658291)
chr7 (163-223)||(32768989-32769049)
chr7 (165-223)||(38578866-38578924)
chr7 (163-223)||(5069812-5069872)
chr7 (164-216)||(8734684-8734736)
chr7 (163-223)||(21530800-21530860)
chr7 (164-212)||(24969324-24969372)
chr7 (163-223)||(28744214-28744274)
chr7 (181-209)||(38988966-38988994)
chr7 (163-223)||(48244353-48244413)
[»] chr1 (11 HSPs)
chr1 (164-223)||(40288476-40288535)
chr1 (164-223)||(16956516-16956575)
chr1 (163-223)||(34719826-34719886)
chr1 (163-223)||(18915917-18915977)
chr1 (163-216)||(37339877-37339930)
chr1 (70-103)||(42694469-42694502)
chr1 (165-222)||(50371834-50371891)
chr1 (163-223)||(8764041-8764101)
chr1 (179-223)||(15466015-15466059)
chr1 (163-223)||(17642002-17642062)
chr1 (163-223)||(43959819-43959879)
[»] chr5 (14 HSPs)
chr5 (163-223)||(4016252-4016312)
chr5 (163-223)||(40773323-40773383)
chr5 (164-223)||(28857196-28857255)
chr5 (164-209)||(28857013-28857058)
chr5 (163-223)||(38897716-38897776)
chr5 (163-222)||(21375402-21375461)
chr5 (185-223)||(20228767-20228805)
chr5 (185-223)||(30995171-30995209)
chr5 (165-213)||(2485256-2485304)
chr5 (163-223)||(19572774-19572834)
chr5 (70-118)||(28838141-28838189)
chr5 (163-223)||(39099776-39099836)
chr5 (179-223)||(41801027-41801071)
chr5 (163-223)||(42086377-42086437)
[»] chr3 (19 HSPs)
chr3 (163-223)||(7310701-7310761)
chr3 (166-223)||(3507534-3507591)
chr3 (163-223)||(28572209-28572269)
chr3 (164-223)||(47164155-47164214)
chr3 (164-223)||(50753340-50753399)
chr3 (165-223)||(30767247-30767305)
chr3 (163-221)||(36043672-36043730)
chr3 (163-223)||(13893975-13894035)
chr3 (163-223)||(15320235-15320295)
chr3 (164-223)||(7650276-7650335)
chr3 (164-223)||(55069678-55069737)
chr3 (163-209)||(44064607-44064653)
chr3 (163-212)||(34374440-34374489)
chr3 (170-223)||(50405608-50405661)
chr3 (166-223)||(51682955-51683012)
chr3 (163-223)||(3136692-3136752)
chr3 (163-223)||(24506646-24506706)
chr3 (163-223)||(26361965-26362025)
chr3 (163-223)||(29127968-29128028)
[»] chr4 (13 HSPs)
chr4 (164-223)||(47078512-47078571)
chr4 (163-223)||(36262764-36262824)
chr4 (164-223)||(38166081-38166140)
chr4 (165-223)||(14124070-14124128)
chr4 (164-207)||(15732446-15732489)
chr4 (164-223)||(16645172-16645231)
chr4 (164-223)||(47682380-47682439)
chr4 (164-223)||(48834698-48834757)
chr4 (165-223)||(7246645-7246703)
chr4 (165-223)||(14567293-14567351)
chr4 (164-209)||(55921102-55921147)
chr4 (163-223)||(1940774-1940834)
chr4 (166-218)||(48352509-48352561)
[»] chr6 (12 HSPs)
chr6 (163-223)||(9633622-9633682)
chr6 (163-216)||(30788850-30788903)
chr6 (164-220)||(3601140-3601196)
chr6 (179-223)||(14326050-14326094)
chr6 (179-223)||(14419060-14419104)
chr6 (179-216)||(3030656-3030693)
chr6 (163-223)||(5029870-5029930)
chr6 (163-211)||(13116127-13116175)
chr6 (163-223)||(19089551-19089611)
chr6 (163-223)||(21898701-21898761)
chr6 (163-223)||(29444762-29444822)
chr6 (164-208)||(30410513-30410557)
[»] chr2 (15 HSPs)
chr2 (163-223)||(12455359-12455419)
chr2 (164-223)||(41031904-41031963)
chr2 (163-223)||(10823109-10823169)
chr2 (163-223)||(34346284-34346344)
chr2 (164-223)||(18902528-18902587)
chr2 (164-223)||(25540402-25540461)
chr2 (181-223)||(45263682-45263724)
chr2 (170-223)||(10669641-10669694)
chr2 (165-209)||(792217-792261)
chr2 (163-223)||(2528338-2528398)
chr2 (163-223)||(7747323-7747383)
chr2 (163-223)||(8410180-8410240)
chr2 (163-223)||(38005451-38005511)
chr2 (165-209)||(44773326-44773370)
chr2 (163-223)||(44945642-44945702)
[»] scaffold0291 (1 HSPs)
scaffold0291 (164-223)||(6907-6966)
[»] chr8 (7 HSPs)
chr8 (164-223)||(43032954-43033013)
chr8 (166-223)||(15884556-15884613)
chr8 (164-207)||(8997542-8997585)
chr8 (164-223)||(45521221-45521280)
chr8 (163-223)||(2964129-2964189)
chr8 (163-223)||(8803107-8803167)
chr8 (70-118)||(33129255-33129303)
[»] scaffold0011 (2 HSPs)
scaffold0011 (165-223)||(224369-224427)
scaffold0011 (166-223)||(186569-186626)
[»] scaffold0009 (1 HSPs)
scaffold0009 (165-223)||(42831-42889)
[»] scaffold0029 (1 HSPs)
scaffold0029 (163-223)||(41096-41156)
[»] scaffold0010 (1 HSPs)
scaffold0010 (163-223)||(155708-155768)
[»] scaffold0002 (1 HSPs)
scaffold0002 (164-207)||(638-681)
[»] scaffold0005 (1 HSPs)
scaffold0005 (165-223)||(250024-250082)
[»] scaffold0019 (1 HSPs)
scaffold0019 (70-118)||(43200-43248)
[»] scaffold0006 (1 HSPs)
scaffold0006 (163-223)||(68566-68626)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 45758561 - 45758343
Alignment:
Q  1 aaatagcgagtcattatttaaaagttttttcttcgatacatagcattctcttttatttatattacatgagttaaatatgtttttctccctataaatatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45758561 aaatagcgagtcattatttaaaagttttttcttcgatacatagcattctcttttatttatattacatgagttaaatatgtttttctccctataaatatac 45758462  T
Q  101 taacatttgtttttagtcat--catnnnnnnnnntcaaatttttatccaaaacataannnnnnnggctttcgcactggtgtccgacccaccaaagatgag 198  Q
    ||||||||||||||||||||  ||          |||||||||||||||||||||||       ||||||||||| ||| ||||||||||||||| || |    
T  45758461 taacatttgtttttagtcatcacaaaaaaaaaaatcaaatttttatccaaaacataatttttttggctttcgcacgggtttccgacccaccaaaggtgtg 45758362  T
Q  199 cgactaatccgactcgtgt 217  Q
    ||| |||||| ||||||||    
T  45758361 cgattaatccaactcgtgt 45758343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 43346777 - 43346828
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgt 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  43346777 gctttcgcactggtttccgacccaccaaagatgagcgactaatccggctcgt 43346828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 27028389 - 27028331
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||  ||| |||||||||    
T  27028389 ctttcgcaccggtttccgacccaccaaaggtgagcgactaatccagctcatgtgtagag 27028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 13095970 - 13095910
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||| |||| ||| ||||||||||||||| ||||||||||||||| ||| || ||||||    
T  13095970 ggcttttgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagag 13095910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 22993364 - 22993424
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| || |||||||||||| |||||||||||||||  ||||| ||||||    
T  22993364 ggctttcgcaccggtttctgacccaccaaaggtgagcgactaatccggttcgtgcgtagag 22993424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 23658291 - 23658231
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||| |||| ||| || |||||||||||||||  ||||||||||| |||||||||||||    
T  23658291 ggcttttgcacaggtttctgacccaccaaagatggacgactaatccggctcgtgtgtagag 23658231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 32769049 - 32768989
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||| ||| ||| ||||| ||||||||| ||| |||||||||||||||||| ||||||    
T  32769049 ggctttcacaccggtttccgatccaccaaaggtgaacgactaatccgactcgtgcgtagag 32768989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 38578866 - 38578924
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||| ||| || ||||||    
T  38578866 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagag 38578924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 5069812 - 5069872
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||  ||| ||||||||||||||| || |||||||||||| || ||| ||||||    
T  5069812 ggctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggcttgtgcgtagag 5069872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 8734684 - 8734736
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtg 216  Q
    |||||||||| ||| ||||||||||||||| || |||||||||| | ||||||    
T  8734684 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtg 8734736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21530860 - 21530800
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||| || ||| ||||||||||||||| ||||||| |||| || |||||| ||||||    
T  21530860 ggctttcgaaccggtttccgacccaccaaaggtgagcgattaattcggctcgtgcgtagag 21530800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 24969324 - 24969372
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgact 212  Q
    |||||||||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  24969324 gctttcgcaccggtttccgagccatcaaagatgagcgattaatccgact 24969372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 28744274 - 28744214
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||  || ||||||||||||||| ||  ||||||||||| ||||| |||||||    
T  28744274 ggctttcgcaccagtttccgacccaccaaaggtggacgactaatccggctcgtatgtagag 28744214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 38988994 - 38988966
Alignment:
Q  181 cgacccaccaaagatgagcgactaatccg 209  Q
    |||||||||||||||||||||||||||||    
T  38988994 cgacccaccaaagatgagcgactaatccg 38988966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 48244353 - 48244413
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| | ||| ||||||||| ||||||||||||||| ||| || ||||||    
T  48244353 ggctttcgcaccggttttcgatccaccaaaggtgagcgactaatccggctcatgcgtagag 48244413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 40288476 - 40288535
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  40288476 gcttttgcactggtttccgacccaccaaggatgagcgactaatccggctcgtgtgtagag 40288535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 16956575 - 16956516
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||| |||||| ||||||    
T  16956575 gctttcgcactggtttccgacccaccaaaggtgagtgactaatccggctcgtgcgtagag 16956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 34719886 - 34719826
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||  || ||||||||||||||| ||||||||||||| |||||||| ||||||    
T  34719886 ggctttcgcaccagtttccgacccaccaaaggtgagcgactaatctgactcgtgcgtagag 34719826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 18915977 - 18915917
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||| ||||||||| | ||||||||||||||| |||||| ||||||    
T  18915977 ggctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgcgtagag 18915917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 37339930 - 37339877
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtg 216  Q
    ||||||||||| ||| ||| ||||||||||| || |||||||||||| ||||||    
T  37339930 ggctttcgcaccggtttccaacccaccaaaggtgggcgactaatccggctcgtg 37339877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 42694469 - 42694502
Alignment:
Q  70 gttaaatatgtttttctccctataaatatactaa 103  Q
    ||||||||||||||| ||||||||||||||||||    
T  42694469 gttaaatatgtttttgtccctataaatatactaa 42694502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 50371834 - 50371891
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtaga 222  Q
    ||||||||| ||| ||||| |||||||||||| |||||||||||| || ||| |||||    
T  50371834 ctttcgcaccggtttccgatccaccaaagatgggcgactaatccggcttgtgcgtaga 50371891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 8764101 - 8764041
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||| | ||  ||||||||||| |||||| ||||||    
T  8764101 ggctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagag 8764041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 15466059 - 15466015
Alignment:
Q  179 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||| |||||||| |||| |||||||| ||||||    
T  15466059 tccgacccaccaaaggtgagcgaccaatcagactcgtgcgtagag 15466015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 17642002 - 17642062
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||  || ||||||||||||||| ||  ||||||||||| |||||| ||||||    
T  17642002 ggctttcgcaccagtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagag 17642062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 43959819 - 43959879
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||| |||| |||| || |||||||||||| |||||| ||||||    
T  43959819 ggctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagag 43959879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 4016252 - 4016312
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||||||| |||||||||||||    
T  4016252 ggctttcgcactggtttccgacccaccaatggtgagcaactaatccggctcgtgtgtagag 4016312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 40773383 - 40773323
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| |||||| |||||||||||| ||||||||||||||||| |||||||    
T  40773383 ggctttcgcaccggtttccgacgcaccaaagatgaacgactaatccgactcgtatgtagag 40773323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 28857255 - 28857196
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||| ||| || ||||||    
T  28857255 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagag 28857196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 28857058 - 28857013
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccg 209  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  28857058 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatccg 28857013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 38897716 - 38897776
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||| ||||| ||||||||| || || ||||||||| |||||| ||||||    
T  38897716 ggctttcgcactggtttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagag 38897776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 21375461 - 21375402
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtaga 222  Q
    ||||||||||||||| ||||| ||| ||||||||  ||||||||||||||| || |||||    
T  21375461 ggctttcgcactggtttccgatccatcaaagatggacgactaatccgactcatgcgtaga 21375402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 20228805 - 20228767
Alignment:
Q  185 ccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  20228805 ccaccaaagatgggcgactaatctgactcgtgtgtagag 20228767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 30995209 - 30995171
Alignment:
Q  185 ccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  30995209 ccaccaaagatgagcgactaatccggctcgtgcgtagag 30995171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2485304 - 2485256
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactc 213  Q
    ||||||||  ||| ||||||||| ||||| |||||||||||||||||||    
T  2485304 ctttcgcatcggtttccgacccatcaaaggtgagcgactaatccgactc 2485256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 19572834 - 19572774
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||| ||| ||||||||| | ||| ||||||||||| ||| || ||||||    
T  19572834 ggctttcgcactggtttccaacccaccaatggtgaacgactaatccggctcatgcgtagag 19572774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 28838141 - 28838189
Alignment:
Q  70 gttaaatatgtttttctccctataaatatactaacatttgtttttagtc 118  Q
    ||||||||||||||| ||||||||||||||| ||| |||  ||||||||    
T  28838141 gttaaatatgtttttgtccctataaatataccaacttttcgttttagtc 28838189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 39099776 - 39099836
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||| |||| ||| ||||||||||||||| || |||||||||||| ||| || ||||||    
T  39099776 ggcttttgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagag 39099836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 41801071 - 41801027
Alignment:
Q  179 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||||||||| ||||||||||| |||||| ||||||    
T  41801071 tccgacccatcaaagatgaacgactaatccggctcgtgcgtagag 41801027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 42086437 - 42086377
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||||| ||  ||||||||||| ||| || ||||||    
T  42086437 ggctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagag 42086377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 7310701 - 7310761
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  7310701 ggctttcgcatcggtttccgacccaccaaagatgagcgactaatccggctcgtgcgtagag 7310761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 3507534 - 3507591
Alignment:
Q  166 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||| |||||| ||||||    
T  3507534 tttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcgtgcgtagag 3507591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 28572209 - 28572269
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||    
T  28572209 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 28572269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 47164214 - 47164155
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||| ||| ||| ||||| ||||||||||||||||||||||||| |||||| ||||||    
T  47164214 gctttcacaccggtttccgatccaccaaagatgagcgactaatccggctcgtgcgtagag 47164155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 50753340 - 50753399
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||| |||| ||| ||||||||||||| ||||| |||||||||||||||||| ||||||    
T  50753340 gcttttgcaccggtttccgacccaccaatgatgaacgactaatccgactcgtgcgtagag 50753399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 30767247 - 30767305
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| || ||||||||||||||| || |||||||||||| |||||| ||||||    
T  30767247 ctttcgcactagtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 30767305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 36043672 - 36043730
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtag 221  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||    
T  36043672 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtag 36043730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 13894035 - 13893975
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| | ||| ||||||||| || |||||||||||| |||||||||||||    
T  13894035 ggctttcgcaccggttttcgatccaccaaaggtgggcgactaatccggctcgtgtgtagag 13893975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 15320295 - 15320235
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| || |||||||||||| || |||||||||||| |||||| ||||||    
T  15320295 ggctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 15320235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 7650335 - 7650276
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||| ||||||||||| || |||||||||||| |||||| ||||||    
T  7650335 gctttcgcaccggtttccaacccaccaaaggtgggcgactaatccggctcgtgcgtagag 7650276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 55069678 - 55069737
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||| |||| ||| ||||||||||||||| ||||||| ||||||| |||||| ||||||    
T  55069678 gcttttgcaccggtttccgacccaccaaaggtgagcgattaatccggctcgtgcgtagag 55069737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 44064653 - 44064607
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccg 209  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||||    
T  44064653 ggcttttgcaccggtttccgacccaccaaaggtgagcgactaatccg 44064607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 34374440 - 34374489
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgact 212  Q
    ||||||| ||| ||| |||||||||||||||| | |||||||||||||||    
T  34374440 ggctttcacaccggtttccgacccaccaaagaagggcgactaatccgact 34374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 50405608 - 50405661
Alignment:
Q  170 gcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||| ||| ||||||||||||| | || ||||||||||||||||||| ||||||    
T  50405608 gcaccggtttccgacccaccaatggtgggcgactaatccgactcgtgcgtagag 50405661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 51682955 - 51683012
Alignment:
Q  166 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||| ||||||||||||  | || |||||||||||| |||||||| ||||    
T  51682955 tttcgcactggtttccgacccaccattggtgggcgactaatccggctcgtgtggagag 51683012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 3136692 - 3136752
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||| ||||||| ||  ||||||||||||||| || ||||||    
T  3136692 ggctttcgcaccggtttccgaccaaccaaaggtggacgactaatccgactcatgcgtagag 3136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 24506646 - 24506706
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||| |||| ||| ||||||||||||| | ||||||||||||| ||||| || ||||||    
T  24506646 ggcttttgcaccggtttccgacccaccaatggtgagcgactaatctgactcatgcgtagag 24506706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 26361965 - 26362025
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||| ||| ||| ||||||||| ||||| || |||||||||||| |||||| ||||||    
T  26361965 ggctttcacaccggtttccgacccatcaaaggtgtgcgactaatccggctcgtgcgtagag 26362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 29128028 - 29127968
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||  ||| ||||||||||||||| || |||||||||||| ||| || ||||||    
T  29128028 ggctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagag 29127968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 47078571 - 47078512
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||| |||||| ||||||    
T  47078571 gctttcgcactggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagag 47078512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 36262764 - 36262824
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| |||| || |||||||||||| || ||||||||||||||||||| ||||||    
T  36262764 ggctttcgcattggtttctgacccaccaaaggtgggcgactaatccgactcgtgcgtagag 36262824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 38166140 - 38166081
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||    
T  38166140 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 38166081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 14124128 - 14124070
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||| ||| ||||||||| | ||||||||||||||| |||||||||||||    
T  14124128 ctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagag 14124070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 15732446 - 15732489
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatc 207  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||    
T  15732446 gctttcgcaccggtttccgatccaccaaagatgagcgactaatc 15732489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 16645231 - 16645172
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| |||||||||||| || || |||||||||| ||||| |||||||||    
T  16645231 gctttcgcaccggtttccgacccaccacaggtgggcgactaatcagactcatgtgtagag 16645172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 47682380 - 47682439
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| || |||||||| ||| |||||| ||||||    
T  47682380 gctttcgcaccggtttccgacccaccaaaggtgggcgactaacccggctcgtgcgtagag 47682439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 48834698 - 48834757
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| |  |||||||||||||||| ||| |||||    
T  48834698 gctttcgcaccggtttccgacccaccaaaggtaggcgactaatccgactcatgtatagag 48834757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 7246645 - 7246703
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||| ||| || ||||||    
T  7246645 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagag 7246703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 14567351 - 14567293
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| | | |||||||||||||||  |||||||||||||| |||||| ||||||    
T  14567351 ctttcgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagag 14567293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 55921147 - 55921102
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccg 209  Q
    |||||||||| ||| ||||||||||||||| ||||||| |||||||    
T  55921147 gctttcgcaccggtttccgacccaccaaaggtgagcgattaatccg 55921102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 1940774 - 1940834
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||| |||||| ||| | ||||||||||||| || |||||||||||| |||||| ||||||    
T  1940774 ggctatcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 1940834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 48352509 - 48352561
Alignment:
Q  166 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtg 218  Q
    |||||||||||| |||||| || ||||||||  ||||||||||| ||||||||    
T  48352509 tttcgcactggtctccgactcatcaaagatggacgactaatccggctcgtgtg 48352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 9633622 - 9633682
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||    
T  9633622 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 9633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 30788850 - 30788903
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtg 216  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| ||||||    
T  30788850 ggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtg 30788903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 3601196 - 3601140
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgta 220  Q
    |||||||||| ||| ||||||||||||||| ||  ||||||||||| ||||||||||    
T  3601196 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgta 3601140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 14326094 - 14326050
Alignment:
Q  179 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||    
T  14326094 tccgacccaccaaagatgagcgactaatccggctcatgcgtagag 14326050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 14419104 - 14419060
Alignment:
Q  179 tccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||    
T  14419104 tccgacccaccaaagatgagcgactaatccggctcatgcgtagag 14419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 3030656 - 3030693
Alignment:
Q  179 tccgacccaccaaagatgagcgactaatccgactcgtg 216  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  3030656 tccgacccaccaaatgtgagcgactaatccgactcgtg 3030693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 5029930 - 5029870
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||  || ||||||||| |||||||| ||||||||||| |||| || ||||||    
T  5029930 ggctttcgcaccagtttccgacccatcaaagatgggcgactaatccaactcatgcgtagag 5029870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 13116127 - 13116175
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgac 211  Q
    ||||||||||| ||| |||||||||||||| |||| ||| |||||||||    
T  13116127 ggctttcgcaccggtttccgacccaccaaaaatgaacgattaatccgac 13116175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 19089611 - 19089551
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||||| |   ||||||||||| |||||| ||||||    
T  19089611 ggctttcgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagag 19089551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21898761 - 21898701
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||    
T  21898761 ggctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagag 21898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 29444762 - 29444822
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||| || ||||||||||||||||||  | ||||||||| ||| || ||||||    
T  29444762 ggctttcgcactagtttccgacccaccaaagatggacaactaatccggctcatgcgtagag 29444822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 30410557 - 30410513
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatcc 208  Q
    |||||||||  ||| ||||||||||||||||||||||| ||||||    
T  30410557 gctttcgcatcggtttccgacccaccaaagatgagcgattaatcc 30410513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 12455419 - 12455359
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||| | ||||||||||||||| |||||| ||||||    
T  12455419 ggctttcgcaccggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagag 12455359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 41031904 - 41031963
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||||| ||||||||||||||| || | |||||||||| |||||| ||||||    
T  41031904 gctttcgcactggtttccgacccaccaaaggtgggtgactaatccggctcgtgcgtagag 41031963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 10823169 - 10823109
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| |||||||||| |||| || |||||||||||| |||||| ||||||    
T  10823169 ggctttcgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagag 10823109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 34346284 - 34346344
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||||||||||||| ||||||| ||||| ||||| || ||||||    
T  34346284 ggctttcgcaccggtttccgacccaccaaaggtgagcgattaatctgactcatgcgtagag 34346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 18902528 - 18902587
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| || |||||||||| | |||||| ||||||    
T  18902528 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagag 18902587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 25540402 - 25540461
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| ||  ||||||||||| |||||| ||||||    
T  25540402 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagag 25540461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 45263682 - 45263724
Alignment:
Q  181 cgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||    
T  45263682 cgacccaccaaagatgagcgattaatccggctcgtgcgtagag 45263724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 10669694 - 10669641
Alignment:
Q  170 gcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||| ||| ||||||||||||||| ||| ||| |||||||||||||| ||||||    
T  10669694 gcaccggtttccgacccaccaaaggtgaacgattaatccgactcgtgcgtagag 10669641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 792261 - 792217
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccg 209  Q
    |||| |||| ||| |||||||||||||||||| ||||||||||||    
T  792261 cttttgcaccggtttccgacccaccaaagatgggcgactaatccg 792217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 2528338 - 2528398
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||  || |||||| ||| |||||||||||||||||||| ||  |||||||||    
T  2528338 ggctttcgcaccagtttccgactcactaaagatgagcgactaatccggcttatgtgtagag 2528398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 7747383 - 7747323
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| |||||||||| |||| ||| ||||||||||| ||| || ||||||    
T  7747383 ggctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagag 7747323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 8410240 - 8410180
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| |||||||| |||||  || |||||||||||| |||||| ||||||    
T  8410240 ggctttcgcaccggtttccgaccccccaaaagtgggcgactaatccggctcgtgcgtagag 8410180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 38005511 - 38005451
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||||  || ||||| ||||||||| || |||||||||||| ||| |||||||||    
T  38005511 ggctttcgcaccagtttccgatccaccaaaggtgggcgactaatccggctcatgtgtagag 38005451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 44773370 - 44773326
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccg 209  Q
    ||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  44773370 ctttcgcaccggtttccgacccatcaaaggtgagcgactaatccg 44773326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 44945702 - 44945642
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| ||||| |||| |||| || |||||||||||| |||||| ||||||    
T  44945702 ggctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagag 44945642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 6966 - 6907
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||| ||| || ||||||    
T  6966 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 43033013 - 43032954
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| || |||||||||||| || |||||||||||| |||||||||||||    
T  43033013 gctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagag 43032954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 15884556 - 15884613
Alignment:
Q  166 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||| ||| ||||||||||||||| || |||||||||||| |||||| ||||||    
T  15884556 tttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 15884613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 8997542 - 8997585
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatc 207  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||    
T  8997542 gctttcgcaccggtttccgacccaccaaagatgaacgactaatc 8997585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 45521280 - 45521221
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||||| ||| || ||||||    
T  45521280 gctttcgcaccggtttccgacccatcaaaggtgagcgactaatccggctcatgcgtagag 45521221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 2964189 - 2964129
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||| || |||||||||||| || ||||||||||||  ||||| ||||||    
T  2964189 ggctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggttcgtgcgtagag 2964129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 8803167 - 8803107
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||  ||| ||||||||||||  |||| |||||||||||| |||||| ||||||    
T  8803167 ggctttcgcatcggtttccgacccaccattgatgggcgactaatccggctcgtgcgtagag 8803107  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 33129303 - 33129255
Alignment:
Q  70 gttaaatatgtttttctccctataaatatactaacatttgtttttagtc 118  Q
    ||||||||||||||| ||||||||||||||| ||| |||  ||||||||    
T  33129303 gttaaatatgtttttgtccctataaatataccaactttttgttttagtc 33129255  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 224427 - 224369
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||| ||||||||||||||||||  ||||||||||| |||||| ||||||    
T  224427 ctttcgcaccggtttccgacccaccaaagatggacgactaatccggctcgtgcgtagag 224369  T

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Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 186626 - 186569
Alignment:
Q  166 tttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||| ||| ||| |||||||||| |||||||| ||||||||||| |||||| ||||||    
T  186626 tttcacaccggtttccgacccactaaagatgaacgactaatccggctcgtgcgtagag 186569  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 42831 - 42889
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||| ||| |||||||||    
T  42831 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgtgtagag 42889  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 41156 - 41096
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||||||| || ||| |||||| ||||||||||| |||||||||||| |||||| ||||||    
T  41156 ggctttcgaaccggtttccgactcaccaaagatgggcgactaatccggctcgtgcgtagag 41096  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 155708 - 155768
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||||| ||  ||||||||||||||| || |||||||||||| |||||| ||||||    
T  155708 ggctttcgcaccggcttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 155768  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 681 - 638
Alignment:
Q  164 gctttcgcactggtgtccgacccaccaaagatgagcgactaatc 207  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  681 gctttcgcaccggtttccgacccaccaaaggtgagcgactaatc 638  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 250024 - 250082
Alignment:
Q  165 ctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    ||||||||| | | |||||||||||||||  |||||||||||||| |||||| ||||||    
T  250024 ctttcgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagag 250082  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 43248 - 43200
Alignment:
Q  70 gttaaatatgtttttctccctataaatatactaacatttgtttttagtc 118  Q
    ||||||||||||||| ||||||||||||||| ||| |||  ||||||||    
T  43248 gttaaatatgtttttgtccctataaatataccaacttttcgttttagtc 43200  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 68626 - 68566
Alignment:
Q  163 ggctttcgcactggtgtccgacccaccaaagatgagcgactaatccgactcgtgtgtagag 223  Q
    |||| |||||| ||| | ||||||||||||| || |||||||||||| |||||| ||||||    
T  68626 ggctatcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagag 68566  T

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