View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3926_low_5 (Length: 389)
Name: NF3926_low_5
Description: NF3926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3926_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 44988186 - 44988504
Alignment:
| Q |
10 |
ataatactaagtcagttcttctgagtaattctttcgttcaatttctagggtttagctctcatcgtctctccaaaccttcatcgtccgcacaccctcacct |
109 |
Q |
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| T |
44988186 |
ataatactaagtcagttcttctgagtaattctttcgctcaatttctagggtttagctctcatcgtctctccaaaccttcatcgtccgcacaccctcacct |
44988285 |
T |
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| Q |
110 |
gctgccatggcgagtaccaaagttcaaagggtcatgacccaacccattgtatgctttctcatcacactctttccctttcaacttctctttaacaacttaa |
209 |
Q |
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| T |
44988286 |
gctgccatggcgagtaccaaagttcaaagggtcatgacccaacccattgtatgctttctcatcacactctttccctttcaatttctctttaacaacttaa |
44988385 |
T |
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| Q |
210 |
cctaatctccg-nnnnnnnctcagaacttgatcttcagatttcttcaaagcaaagcgcggattcagatttggctttttgagcaaaaggatttgaggattg |
308 |
Q |
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| T |
44988386 |
cctaatctccgttttttttctcagaacttgatcttcagatttcttcaaagcaaagcgcggattcagatttggctttttgagcaaaaggatttgaggattg |
44988485 |
T |
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| Q |
309 |
aaggaagaatcattgtaag |
327 |
Q |
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| T |
44988486 |
aaggaagaatcattgtaag |
44988504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 30881877 - 30882013
Alignment:
| Q |
47 |
tcaatttctagggtttagctctcatcgtctctccaaaccttcatcgtccgcacaccctcacctgctgccatggcgagtaccaaagttcaaagggtcatga |
146 |
Q |
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| T |
30881877 |
tcaatttttagggtttagctctcatcgtctctccaaaccttcaccgtccgctcaccctcaccagctgccatggcgagcaccaaagttcagagggttatga |
30881976 |
T |
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| Q |
147 |
cccaacccattgtatgctttctcatcacactctttcc |
183 |
Q |
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| T |
30881977 |
cccaacccattgtacgctttctcaacacactctttcc |
30882013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 30882197 - 30882264
Alignment:
| Q |
260 |
aaagcgcggattcagatttggctttttgagcaaaaggatttgaggattgaaggaagaatcattgtaag |
327 |
Q |
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| T |
30882197 |
aaagcgcggattcagatttggctttttgagcagaaggatttgagaattgaaggaagaatcattgtaag |
30882264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 30882087 - 30882116
Alignment:
| Q |
230 |
cagaacttgatcttcagatttcttcaaagc |
259 |
Q |
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| T |
30882087 |
cagaacttgatcttcagatttcttcaaagc |
30882116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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