View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3926_low_6 (Length: 350)

Name: NF3926_low_6
Description: NF3926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3926_low_6
NF3926_low_6
[»] chr7 (11 HSPs)
chr7 (1-335)||(20229755-20230089)
chr7 (1-335)||(20262338-20262672)
chr7 (1-335)||(20241705-20242039)
chr7 (49-329)||(20090704-20090984)
chr7 (1-331)||(20292718-20293048)
chr7 (46-295)||(20301956-20302205)
chr7 (1-292)||(20282270-20282563)
chr7 (215-302)||(20064370-20064457)
chr7 (2-285)||(20277701-20277984)
chr7 (1-302)||(20271940-20272241)
chr7 (233-285)||(20007248-20007300)
[»] chr4 (1 HSPs)
chr4 (225-327)||(40821018-40821120)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 20230089 - 20229755
Alignment:
Q  1 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20230089 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttctgaattcagg 20229990  T
Q  101 tgatagatcatcagttccttgtcgtttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtt 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20229989 tgatagatcatcagttccttgtcatttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtt 20229890  T
Q  201 tcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20229889 tcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcg 20229790  T
Q  301 ttgaacgctattacaagagaagttgccaacagagg 335  Q
    |||||||||||||||||||||||||||||||||||    
T  20229789 ttgaacgctattacaagagaagttgccaacagagg 20229755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 20262672 - 20262338
Alignment:
Q  1 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcagg 100  Q
    |||||||||||| |||| || |||||||||||||| |||  |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  20262672 ataaacatcacattctgtgttttggcttttccatgtcactttcatttctttattcttatcatcccaccatatttcttcgaatattccttgtgaattcagg 20262573  T
Q  101 tgatagatcatcagttccttgtcgtttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtt 200  Q
    ||||||||| | | |||| | || |||| ||  ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |  ||    
T  20262572 tgatagatcgttatttccctatcatttgctaacgtataaaatataacaatatttccttctccatcatcttcaccttgaaaactattaagatatgcagctt 20262473  T
Q  201 tcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcg 300  Q
    ||||| ||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20262472 tcattgtttgtatccctgtaaagaccccacggttccaaggaccactgcgccaacatggtcgagtttcattccaaataaacacttcaaatatattttggcg 20262373  T
Q  301 ttgaacgctattacaagagaagttgccaacagagg 335  Q
    || ||||||||||||||||||||||||||||||||    
T  20262372 ttcaacgctattacaagagaagttgccaacagagg 20262338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 20242039 - 20241705
Alignment:
Q  1 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcagg 100  Q
    |||||||||||| |||| || |||||||||||||  |||  |||||||||| ||||||||||||||||| |||| ||| |||||||||| ||||||||||    
T  20242039 ataaacatcacattctgcgttttggcttttccatctcactttcatttctttattctgatcatcccaccacattttttcaaatattccttttgaattcagg 20241940  T
Q  101 tgatagatcatcagttccttgtcgtttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtt 200  Q
    ||||||||| | | |||| |||| ||||||   ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||||  || ||    
T  20241939 tgatagatccttatttccgtgtcatttggttgcgtataaaatataacattatttccttctccatcatctccaccttgaaaagtattagtatatacaaatt 20241840  T
Q  201 tcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcg 300  Q
     |||| ||||||| ||||| |||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| || ||||    
T  20241839 ccattttttgtatccctgtaaagaccctgccattccaaggaccactgcgccaaaatggccgagttccattccaaataaacacttcaagtatacttaggcg 20241740  T
Q  301 ttgaacgctattacaagagaagttgccaacagagg 335  Q
    || |||  || ||  ||||||||||||||||||||    
T  20241739 ttcaacagtactagcagagaagttgccaacagagg 20241705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 20090704 - 20090984
Alignment:
Q  49 tttcttctgatcatcccaccatatttcttccaatattccttgtgaattcaggtgatagatcatcagttccttgtcgtttggtattgtataaaatataaca 148  Q
    |||||| | ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| | ||||||||| |||| ||  ||||||||||||| |    
T  20090704 tttcttgtcatcatcccaccatgtttcttctaatcttccttgtgaattcaggtgatagatcattaattccttgtcatttgataacgtataaaatataaga 20090803  T
Q  149 atatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtttcattatttgtattcctgtgaagaccccaccattccaaggaccactgc 248  Q
    || |||||||||||||||||||||||||||||| ||||| |||||| || ||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  20090804 atttttccttctccgtcatctccaccttgaaaactattaagatatgcaactttcattgtttgtatccctgtaaagaccccaccgttccaaggaccactgc 20090903  T
Q  249 gccaacatggccgagtttcattccaaataaacacttcaaatatattttggcgttgaacgctattacaagagaagttgccaa 329  Q
    ||||||||||| |||||||||||||||| |||| ||||| ||||||| |||||| |||  || || |||||||||||||||    
T  20090904 gccaacatggctgagtttcattccaaatgaacagttcaagtatatttaggcgttcaacagtactagaagagaagttgccaa 20090984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 20293048 - 20292718
Alignment:
Q  1 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcagg 100  Q
    |||||||||||||||||| | | || || |||||| |||  ||||||||||||||| |||||||||||   |||| || ||| ||||||||||| ||||     
T  20293048 ataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccgcgtttcatctaattttccttgtgaagtcagc 20292949  T
Q  101 tgatagatcatcagttccttgtcgtttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtt 200  Q
    ||||||||||  |  || |  || ||| |||  |||||| ||||  ||||||| ||| |||| ||||||||  || |||||  |  |  ||||| || |     
T  20292948 tgatagatcaaaaactcatcatcattttgtaaagtataatatatgtcaatattccctgctccatcatctcctactcgaaaaccaaaaaaatatgcaactg 20292849  T
Q  201 tcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcg 300  Q
    ||||| | ||||  || ||||||||||| |||||||| ||||||||||||||| ||||  ||||| ||||||||||||||||||| |  |||||| ||||    
T  20292848 tcattgtatgtaccccagtgaagaccccgccattccagggaccactgcgccaatatggttgagttccattccaaataaacacttcgataatatttaggcg 20292749  T
Q  301 ttgaacgctattacaagagaagttgccaaca 331  Q
    || |||  |  ||||||| ||||||||||||    
T  20292748 ttcaactgtcctacaagaaaagttgccaaca 20292718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 295
Target Start/End: Complemental strand, 20302205 - 20301956
Alignment:
Q  46 ttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcaggtgatagatcatcagttccttgtcgtttggtattgtataaaatata 145  Q
    |||||||||||  |||| |||||  |||||||| ||| |||||||||||||||||| ||||||||  |   |||  |  ||||| || ||| || |||||    
T  20302205 ttctttcttctcgtcattccaccgcatttcttctaattttccttgtgaattcaggttatagatcaagaacacctcattatttggcatcgtaaaatatata 20302106  T
Q  146 acaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtttcattatttgtattcctgtgaagaccccaccattccaaggaccac 245  Q
       ||||| |||| ||||||||||||||||||||||  ||||  ||||| |  | ||||  | | ||| ||||| |||||||| |||||||| ||||| |    
T  20302105 tttatattcccttgtccgtcatctccaccttgaaaaccattaaaatatgcagttgtcatagtatctatccctgtaaagaccccgccattccagggaccgc 20302006  T
Q  246 tgcgccaacatggccgagtttcattccaaataaacacttcaaatatattt 295  Q
    |||||||  |||| |||||||||||||||||||||||||||| |||||||    
T  20302005 tgcgccagtatggtcgagtttcattccaaataaacacttcaagtatattt 20301956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 20282563 - 20282270
Alignment:
Q  1 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcagg 100  Q
    |||| ||||||||||||||| ||||||| ||||||  || || | |||||||||||  |||||||||| | ||||||| ||| ||||||||||||| |||    
T  20282563 ataagcatcacactctgagtcttggcttctccatgtaacaataacttctttcttctcctcatcccaccgtctttcttcaaattttccttgtgaattgagg 20282464  T
Q  101 tgatagatcatcagttccttgtcgtttggtattgtata--aaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaag 198  Q
    ||||||||||| |  ||||  |  |||  ||   ||||  | |||||  |||||| ||||||||||||||||  ||||||||| ||  |  ||||| |      
T  20282463 tgatagatcataaagtcctcataattttctaccctataatatatatattaatattcccttctccgtcatctcttccttgaaaactaaaaaaatatgcagc 20282364  T
Q  199 tttcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatata 292  Q
    | ||||| ||||||| || |||||||| |||||||||||||| ||| |||||||  ||    |||||||||||||||| |||||||||| ||||    
T  20282363 tgtcattgtttgtatcccagtgaagacgccaccattccaaggcccaatgcgccagtatatgtgagtttcattccaaatgaacacttcaattata 20282270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 20064370 - 20064457
Alignment:
Q  215 cctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcgtt 302  Q
    ||||| |||||||||||||||||||| || || |||||  ||||  ||||||||||||||||||||||||||| ||||||||||||||    
T  20064370 cctgtaaagaccccaccattccaagggccgctacgccagtatggttgagtttcattccaaataaacacttcaagtatattttggcgtt 20064457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 20277984 - 20277701
Alignment:
Q  2 taaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcaggt 101  Q
    ||||||||||||||  ||| ||||||| ||||||  || || | |||||| ||||  |||| ||||  | || |||| ||| ||||||||||||| ||||    
T  20277984 taaacatcacactccaagtcttggcttgtccatgtaacaataacttcttttttctcgtcataccactgtgttgcttctaattttccttgtgaatttaggt 20277885  T
Q  102 gatagatcatcagttccttgtcgtttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagttt 201  Q
    || ||||||  |  ||||  || |||  ||  |||||| |||||  |||||| ||||||||||| ||||| ||||||||| ||  |  ||||| |  | |    
T  20277884 gaaagatcacaaagtcctcatcattttctaccgtataatatatattaatattcccttctccgtcgtctcctccttgaaaactaaaaaaatatgcagctgt 20277785  T
Q  202 cattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttc 285  Q
    |||| ||||||| || ||||||||||| ||||||||||| |||||||||||  ||   | ||||||||||||||| ||||||||    
T  20277784 cattgtttgtatcccagtgaagacccccccattccaaggcccactgcgccagtatatgctagtttcattccaaatgaacacttc 20277701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 20272241 - 20271940
Alignment:
Q  1 ataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttgtgaattcagg 100  Q
    |||||||||||||||||| | | ||||| ||||||  ||    | ||||||||||| ||||||||||| | ||||||| |||| ||| ||||||||||      
T  20272241 ataaacatcacactctgaatctcggcttgtccatgtaacatgaacttctttcttctcatcatcccaccgtttttcttctaatactccatgtgaattcaaa 20272142  T
Q  101 tgatagatcatcagttccttgtcgtttggtattgtataaaatataacaatatttccttctccgtcatctccaccttgaaaagtattacgatatgaaagtt 200  Q
    ||||||||||  | | ||   || ||| |||| || ||| |||||  | || | |||||||| ||||||||| ||||||||  |  |  |||||  | |     
T  20272141 tgatagatcactaatcccacatcattttgtatagtgtaatatatactagtactcccttctccatcatctccaacttgaaaatcaaaaaaatatgccattg 20272042  T
Q  201 tcattatttgtattcctgtgaagaccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcg 300  Q
     ||||   ||||| || |||||||| ||||||||||| ||||||||||||||  |||  ||||||||||||||||| ||||||||   ||||| ||||||    
T  20272041 ccattgcctgtatcccagtgaagacaccaccattccagggaccactgcgccaggatgttcgagtttcattccaaatgaacacttcgtgtatatgttggcg 20271942  T
Q  301 tt 302  Q
    ||    
T  20271941 tt 20271940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 20007248 - 20007300
Alignment:
Q  233 ttccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttc 285  Q
    |||||||||||||| |||||| |||||||| |||| |||| |||||| |||||    
T  20007248 ttccaaggaccactccgccaatatggccgattttctttcctaataaaaacttc 20007300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 40821018 - 40821120
Alignment:
Q  225 ccccaccattccaaggaccactgcgccaacatggccgagtttcattccaaataaacacttcaaatatattttggcgttgaacgctattacaagagaagtt 324  Q
    ||||||||||||| |||||||||||| |||||||  ||||| |||||||||| |||||||||| ||||||| |||||| |||  |  || ||||||||||    
T  40821018 ccccaccattccagggaccactgcgctaacatggttgagttccattccaaatgaacacttcaattatatttaggcgttcaactgtcctaaaagagaagtt 40821117  T
Q  325 gcc 327  Q
    |||    
T  40821118 gcc 40821120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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