View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3926_low_8 (Length: 271)
Name: NF3926_low_8
Description: NF3926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3926_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 1865554 - 1865824
Alignment:
| Q |
1 |
agagacaccaaggattgaaccaagagaagcagcatcactacttggtcctggagctggggctgggccatgaacatggcgatgatgatggtagtgatcacgt |
100 |
Q |
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| T |
1865554 |
agagacaccaaggattgaaccaggagaagcagcatcactacttggtcctggagctggggctgggccatgaacatggcgatgatgatggtagtgatcacgt |
1865653 |
T |
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| Q |
101 |
gccataatggagcttatggcggctaagaggacaacaacaaaagcaacaatcttcatcttcattgtgtacttagtctacaaaaaggaatatgaatgagttt |
200 |
Q |
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| T |
1865654 |
gccataacggagcttatggcggctaagaggacaacaacaaaagcaacaatcttcatcttcattgtgtacttagtctacaaaaaggaatatgaatgagttt |
1865753 |
T |
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| Q |
201 |
gaatcatggatagagggttaatttatagtggaaattacgtctgctattattatgagactttaattttgtaa |
271 |
Q |
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| T |
1865754 |
gaatcatggatagagggttaatttatagtggaaattacgtctgctattattatgagactttaattttgtaa |
1865824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 1861660 - 1861697
Alignment:
| Q |
117 |
tggcggctaagaggacaacaacaaaagcaacaatcttc |
154 |
Q |
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| T |
1861660 |
tggctgctatgaggacaacaacaaaagcaacaatcttc |
1861697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 1861552 - 1861588
Alignment:
| Q |
6 |
caccaaggattgaaccaagagaagcagcatcactact |
42 |
Q |
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| T |
1861552 |
caccaaggattgaaccaaaagaaacagcatcactact |
1861588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 52501185 - 52501115
Alignment:
| Q |
6 |
caccaaggattgaaccaagagaagcagcatcactacttggtcctggagctggggctgggccatgaacatgg |
76 |
Q |
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| T |
52501185 |
caccaaggattgaaccaagataaacagcatcactacttggtcctggagctggggctgggccatgaaaatgg |
52501115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 52501042 - 52500986
Alignment:
| Q |
92 |
tgatcacgtgccataatggagcttatggcggctaagaggacaacaacaaaagcaaca |
148 |
Q |
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| T |
52501042 |
tgatcatgtgccagaacggagcatatggtagctaagaggacaacaacaaaagcaaca |
52500986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13503705 - 13503743
Alignment:
| Q |
1 |
agagacaccaaggattgaaccaagagaagcagcatcact |
39 |
Q |
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| T |
13503705 |
agaggcaccaaagattgaaccaagagaagcagcatcact |
13503743 |
T |
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