View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_high_1 (Length: 651)
Name: NF3927_high_1
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_1 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 399 - 635
Target Start/End: Complemental strand, 37523178 - 37522942
Alignment:
| Q |
399 |
agctaattaaattccattcactatcctgcaaagtctttcaccacaccacgaatcgaaaaaaccaaacataataataccatcatattcgataccaacaatc |
498 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37523178 |
agctaattaaattccattcagtatcctgcaaagtctttcaccacaccacgaatcgaaaaaaccaaacataataataccatcatattcgataccaacaatc |
37523079 |
T |
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| Q |
499 |
acaaagaccatgacaatgttttaacccgtctgtctataagaagagatggtaatgacccaagccaaacccaataatagaaaaacgacaaaaataattattc |
598 |
Q |
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||||||||||||| | || |||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |
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| T |
37523078 |
acaaagaccatgagagtgatttaacccctctctctatcagaagagatggtaatgacccaagccaagcccaataatggaaaaacgacaaagataattattc |
37522979 |
T |
|
| Q |
599 |
ctatgaaacccactcctagttcttcaaccttgataat |
635 |
Q |
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| T |
37522978 |
ctatgaaacccactcctagctcttcaaccttgataat |
37522942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 237 - 399
Target Start/End: Complemental strand, 37523454 - 37523287
Alignment:
| Q |
237 |
acgatgacaatgagttatatatctatttcaaacaatatagcatttaatttgacaaatgaataattaataccaaaatcaatggt-----attataccatag |
331 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
37523454 |
acgatggcaatgaattatatatctatttcaaacaatatagcatttaatttgacaaatgaataattaataccaaaatcaatggtactccattatacaatag |
37523355 |
T |
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| Q |
332 |
cgacaacaaaatcaacatataattagatcactttttataaatattatgaattaagaaaagaaattaca |
399 |
Q |
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| T |
37523354 |
ccacaacaaaatcaacatataattagatcactttttataaatatcatgaattaagaaaagaaattaca |
37523287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 37523711 - 37523564
Alignment:
| Q |
11 |
cacagacacaaaacgtggaacactaaaatttaaaaattttatccggaatattcttgcatcaattctcatattttaaacgtgtaatccaatgataattttt |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
37523711 |
cacagacacaaaacgtggaacactaaaattaaaaaaatttatacgaaatattcttgcatcaattctcatattttaaacttgtaatccaacggtaattttt |
37523612 |
T |
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| Q |
111 |
ctcctagaacatattcatttttatgggttaaataaatgtttggtcttt |
158 |
Q |
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| T |
37523611 |
ttcctagaacatatttatttttatgggttaaataaatgtttggtcttt |
37523564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 587128 - 587233
Alignment:
| Q |
407 |
aaattccattcactatcctgcaaagtctttcaccacaccacgaatcgaaaaaaccaaacataataataccatcatattcgataccaacaatcacaaagac |
506 |
Q |
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| T |
587128 |
aaatttcatccactatcctataagatctttcatcacaacacaaaccaaaaaaaccaaacataaaaataacatcatattc---aacaacaattacaaaaac |
587224 |
T |
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| Q |
507 |
catgacaat |
515 |
Q |
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||||||||| |
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| T |
587225 |
catgacaat |
587233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 79538 - 79652
Alignment:
| Q |
32 |
actaaaatttaaaaattttatccggaatattcttgcatcaattctcatattttaaacgtgtaatccaatgataatttttctcctagaacatattcatttt |
131 |
Q |
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||||||| ||||||| ||| | | |||||| |||||||||||||| ||||| || ||||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
79538 |
actaaaacttaaaaaatttctacataatatttttgcatcaattctc-tatttcaatcgtgtaatcgaatggtaaattttctcctagaacatattcatttt |
79636 |
T |
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| Q |
132 |
tatgggttaaataaat |
147 |
Q |
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| T |
79637 |
tctgggttaaataaat |
79652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 42381821 - 42381956
Alignment:
| Q |
11 |
cacagacacaaaacgtggaacactaaaatttaaaaattttatccggaatattcttgcatcaattctcatattttaaacgtgtaatccaatgataattttt |
110 |
Q |
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|||||| ||||| || ||| ||||||| ||||||| ||| | | |||||| ||||||| |||||| ||||| || ||||||||| |||| ||| |||| |
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| T |
42381821 |
cacagatacaaagtgtagaatactaaaacttaaaaaatttctacataatatttttgcatctattctc-tatttcaatcgtgtaatcgaatggtaaatttt |
42381919 |
T |
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| Q |
111 |
ctcctagaacatattcatttttatgggttaaataaat |
147 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
42381920 |
ctcctagaacatattcatttttctgggttaaataaat |
42381956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 1746906 - 1747041
Alignment:
| Q |
11 |
cacagacacaaaacgtggaacactaaaatttaaaaattttatccggaatattcttgcatcaattctcatattttaaacgtgtaatccaatgataattttt |
110 |
Q |
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|||||| ||||| || ||| ||||||| ||||||| ||| | | |||||| ||||||||| |||| ||||| || ||||||||| |||| ||| |||| |
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| T |
1746906 |
cacagatacaaagtgtagaatactaaaacttaaaaaatttctacataatatttttgcatcaactctc-tatttcaatcgtgtaatcgaatggtaaatttt |
1747004 |
T |
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| Q |
111 |
ctcctagaacatattcatttttatgggttaaataaat |
147 |
Q |
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| T |
1747005 |
ctcctaaaatatattcatttttctgggttaaataaat |
1747041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 55031628 - 55031503
Alignment:
| Q |
17 |
cacaaaacgtggaacactaaaatttaaaaattttatccggaatattcttgcatcaattctcatattttaaacgtgtaatccaatgataatttttctccta |
116 |
Q |
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|||||||||| ||| | ||||| || |||| ||| | | |||||||||||||||||||||| ||||| ||||| | | ||||| | ||||| |
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| T |
55031628 |
cacaaaacgtagaatattaaaacttcaaaaatttctactgaatattcttgcatcaattctcgtatttcaaacgcgcattccaacg----------tccta |
55031539 |
T |
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| Q |
117 |
gaacatattcatttttatgggttaaataaatgtttg |
152 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
55031538 |
gaacatattcatttttataggttaaataaatgtttg |
55031503 |
T |
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