View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_high_11 (Length: 366)
Name: NF3927_high_11
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 619725 - 620077
Alignment:
| Q |
18 |
aaatcagctgtgtatcaaatcataactgaaataaagtaaaaaccgattaaacagttgtagtattaggcatatatataagtataggtaatttgtgcatgt- |
116 |
Q |
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| T |
619725 |
aaatcagctgtgtatcaaatcataactgaaataaagtaaaaaccgattaaacagttgtagtattaggcatatatagaactataggtaatttgtgcatgtc |
619824 |
T |
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| Q |
117 |
-----------------ttatattaataattaatacgaggttgaagttcgtgttatgttatcatctcaattaagattaattacactatatagtaataata |
199 |
Q |
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| T |
619825 |
atacaggttctatatatttatattaataattaatacgaggttgaagttcgtgttatgttatcatctcaattaagattaattacactatatagtaat-ata |
619923 |
T |
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| Q |
200 |
taaagaacaaaataattnnnnnnnnnnnnnnnnnnnngatttgagcatgcagatgctgattgatggtggagaac-aacctggtgctgagggaagagggaa |
298 |
Q |
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||||||||||||||||| |||||||||||||||| | ||||||||||||||| || ||| ||||| ||||||||||||||| |
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| T |
619924 |
taaagaacaaaataatt--aaaaaaagaaagaaaaaagatttgagcatgcagacggtgattgatggtggagcacaaacgtggtgttgagggaagagggaa |
620021 |
T |
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| Q |
299 |
tcaaatcatcaataatggagttgccagcaaaaagggataaacaaattaattagaat |
354 |
Q |
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| T |
620022 |
tcaaatcatcaataatggagttgccagcaaaaagggataaacatattaattagaat |
620077 |
T |
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