View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3927_high_13 (Length: 342)
Name: NF3927_high_13
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_13 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 118 - 342
Target Start/End: Original strand, 10301306 - 10301530
Alignment:
| Q |
118 |
tgttgtgaactgtataatttttgtcactaacattcagaattgcaagaacttaaaagcagagaaagaaaggaacaaaatagaaatccatttgtgttagcat |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10301306 |
tgttgtgaactgtaaaatttttgtcactaacattcagaattgtaagaacttaatagcagagaaagaaaggaacaaaatagaaatccatttgtgttagcat |
10301405 |
T |
|
| Q |
218 |
tgtatgatcaaaaacaacacaaattaataacaaatgcaacatcaatattcaaaccctagtcccaatttaaatccaaatccacacaattcatcnnnnnnnt |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
10301406 |
tgtataatcaaaaacaacacaaattaataacaaatgcaacatcaatattcaaaccctaatcccaatttaaatccaaatccacacaattcatcaaaaaaat |
10301505 |
T |
|
| Q |
318 |
tggtactttttaagttgtatttttt |
342 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
10301506 |
tggtactttttaagttgtgtttttt |
10301530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 10339152 - 10339340
Alignment:
| Q |
121 |
tgtgaactgtataatttttgtcactaacattcagaattgcaagaacttaaaagcagagaaagaaaggaacaaaatagaaatccatttgtgttagcattgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10339152 |
tgtgaactgtataatttttgtcactaacattcagaattgtaagaacttaaaagcagagaaagaaaggaacaaaatagaaatccatttgtgttatcattgt |
10339251 |
T |
|
| Q |
221 |
atgatcaaaaacaacacaaattaataacaaatgcaacatcaatattcaaaccctagtcccaatttaaatccaaatccacacaattcatc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10339252 |
atgatcaaaaacaacacaaattaataacaaatgcaacatcaatattcaaaccctaatcccaatttaaatccaaatccacacaattcatc |
10339340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 10339061 - 10339090
Alignment:
| Q |
17 |
atattcatcatcaacttcatcaccgctcat |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10339061 |
atattcatcatcaacttcatcaccgctcat |
10339090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 309
Target Start/End: Complemental strand, 32047820 - 32047631
Alignment:
| Q |
128 |
tgtataatttttgtcactaacattcagaattgcaagaac----ttaaaagcagagaaagaaaggaacaaaatagaaatccatttgtgttagcattgtatg |
223 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||| || |||||||||||||||||| | |||||||||| |||| || || ||||||| || |
|
|
| T |
32047820 |
tgtataattttttacactaacattcataattgtaagaacgaactttgaagcagagaaagaaaggatcgaaatagaaatgcattcgtatt-gcattgtgtg |
32047722 |
T |
|
| Q |
224 |
atcaaaaacaacacaaa-----ttaataacaaatgcaacatcaatattcaaaccctagtcccaatttaaatccaaatccacacaattcatc |
309 |
Q |
| |
|
| ||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
32047721 |
aacaaaaacaacacaaaattcattcataacaaatgcaacatcaatcttcaaaccctaatcccaattcaaatccaaatcgacacaatgcatc |
32047631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University