View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_high_14 (Length: 339)
Name: NF3927_high_14
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 39440935 - 39440607
Alignment:
| Q |
1 |
tttggaattggttttcccacagcttaccagacttcccaagtgagagaatcagatcaagttgtttttgctgttgttcctgcacgaatgtacggatacaatc |
100 |
Q |
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| T |
39440935 |
tttggaattggttttcccacagcttaccagacttcccaagtgagagaatcagatcaagttgtttttgctgttgttcctgcacgaatgtacggatacaatc |
39440836 |
T |
|
| Q |
101 |
atgtcaaatttgatggtttctttgactcttttttcatcccggaccaacaagaaataaaacatttgcaacaatactttagcaagcaaaatggccatgaaat |
200 |
Q |
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| T |
39440835 |
atgtcaaatttgatggtttctttgactcttttttcatcccggaccaa---gaaataatacatttgcaagaatactttagcaagcaaaatggccacgaaat |
39440739 |
T |
|
| Q |
201 |
atattaagagagagccacattacacatataacactactatgagtaattgaatacactggcagcataagctaagtaaacaacaatagctgtattaaatcac |
300 |
Q |
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| T |
39440738 |
atattaagagagagccacattacacatataacactactatgagtaattgaatacactggcagcataagctaagtaaacaacaatagctgtattaaatcac |
39440639 |
T |
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| Q |
301 |
tacaaatttcattcagttctaaatactatgag |
332 |
Q |
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| T |
39440638 |
tacaaatttcattcagttctaaatactatgag |
39440607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 37643718 - 37643676
Alignment:
| Q |
45 |
agaatcagatcaagttgtttttgctgttgttcctgcacgaatg |
87 |
Q |
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| T |
37643718 |
agaatgagatcaagttgtttttgctgttgttcctacatgaatg |
37643676 |
T |
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