View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_high_25 (Length: 235)
Name: NF3927_high_25
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 39441130 - 39441341
Alignment:
| Q |
23 |
ctgagttcataatgtttgctgtggatataggttaggagaaattactagtaacaattggttaggacagtatcaattggttctttacgcattggcttctgag |
122 |
Q |
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| T |
39441130 |
ctgagttcataatgtttgctgtggatataggttaggagaaattactagtaacaattggttaggacagtatcaattggttctttacgcattggcttctgag |
39441229 |
T |
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| Q |
123 |
tcaagttttgtaaatttcagcttcaaaattcattctaaaaactcatgttgtgtggctgacacctattgccaataatatgagccccgtttacact-atttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39441230 |
tcaagttttgtaaatttcagcttcaaaattcattctaaaaactcatgttgtgtggctgacacctattgccaataatatgagccccgtttacactaatttt |
39441329 |
T |
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| Q |
222 |
caatcctctctg |
233 |
Q |
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|||||||||||| |
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| T |
39441330 |
caatcctctctg |
39441341 |
T |
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