View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_high_27 (Length: 226)
Name: NF3927_high_27
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 28154009 - 28153820
Alignment:
| Q |
19 |
gagagattcagagattcttgtgaaatttcaaagttaacttggttatttttaacaaagtggaaatatattagaataaaacatataattcactaggcatttt |
118 |
Q |
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| T |
28154009 |
gagagattcagagattcttgtgaaatttcaaagtcaacttggttatttttaacaaagtggaaatatattagaataaaacatataattcactaggcatttt |
28153910 |
T |
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| Q |
119 |
ccaataaactccaatgcttttgcatcttcaaaccagaaaagtgttgctggtagcataccttgaacattaaaagttaaaaattgtttatgt |
208 |
Q |
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| T |
28153909 |
ccaataaactccaatgcttttgcatcttcaaatcagaaaagtgttgctggtagcataccttgaacattaaaagttaaaaattgtttatgt |
28153820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 28188827 - 28188755
Alignment:
| Q |
19 |
gagagattcagagattcttgtgaaatttcaaagttaacttggttatttttaacaaagtggaaatatattagaa |
91 |
Q |
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| T |
28188827 |
gagagattcagagattcttgtgaaatttcaaagtcaacttggttaatttttacaaagtggaaacagattagaa |
28188755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 5951363 - 5951447
Alignment:
| Q |
107 |
actaggcattttccaataaactccaatgcttttgcatcttcaaaccagaaaagtgttgctggtagcataccttgaacattaaaag |
191 |
Q |
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| T |
5951363 |
actaggcattttccaataaactctcgtgcttctgcatcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaag |
5951447 |
T |
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