View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3927_high_6 (Length: 416)
Name: NF3927_high_6
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 38080476 - 38080864
Alignment:
| Q |
9 |
gcaatggatgagtacacttcagagatattcatgggtggaaagaacacaattgtgatgcacaacacatgtgaagattcacttttggcagctccaattatct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38080476 |
gcaatggatgagtacacttcagagatattcatgggtggaaagaacacaattgtgatgcacaacacatgtgaagattcacttttggcagctccaattatct |
38080575 |
T |
|
| Q |
109 |
tggatttggtccttcttgctgaacttagcactagaatccagttcaaatctgaacaagaggtcattatctattgttgcttaaactgttatgtttattcaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38080576 |
tggatttggtccttcttgctgaacttagcactagaatccagttcaaatctgaacaagaggtcattatctattgttgcttaaactgttatgtttattcaat |
38080675 |
T |
|
| Q |
209 |
tattaaaaaactgtgagctaaatctattgctgnnnnnnnnnnnnataggacaagtttcattcattccatgctgttgcaaccatcctcagttacctctcta |
308 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38080676 |
tattaaaaaactgtgagctaaatctgttgctgtttattatttttataggacaagtttcattcattccatgctgttgcaaccatcctcagttacctctcta |
38080775 |
T |
|
| Q |
309 |
aggctccacttgtaagtctaatgtagctggttaattaattatatctataaggttgatgtatagtagtacaataactaattgttacaaattatt |
401 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38080776 |
aggctccacttgtaagtctaatgtagc----tagttaattatatctataaggttgatgtatagtagtaaaataactaattgttacaaattatt |
38080864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 39700021 - 39700170
Alignment:
| Q |
12 |
atggatgagtacacttcagagatattcatgggtggaaagaacacaattgtgatgcacaacacatgtgaagattcacttttggcagctccaattatcttgg |
111 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| |||||||| |||||| |||||||||||||||| || || |||||||| ||||| |||||||||| |
|
|
| T |
39700021 |
atggatgagtacacttcggaaattttcatgggtgggaagaacactattgtgttgcacaacacatgtgaggactcccttttggctgctcctattatcttgg |
39700120 |
T |
|
| Q |
112 |
atttggtccttcttgctgaacttagcactagaatccagttcaaatctgaa |
161 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
39700121 |
acttggttcttcttgctgagcttagcactagaattcagtttaaatctgaa |
39700170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University