View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_10 (Length: 370)
Name: NF3927_low_10
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 31864358 - 31864702
Alignment:
| Q |
13 |
aatatcaacggttgaatttgattatttcttttagacaatttaaaatcgaaataaactataagaataagtaatttgaaaaattgatgagcttccttgctac |
112 |
Q |
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| T |
31864358 |
aatatcaacggttgaatttgcttatttcttttagacaatttaaaatcgaaataaactataagaataagtaatttgaaaaattgatgagcttccttgctac |
31864457 |
T |
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| Q |
113 |
acttattttagataagtaat----acatatgatgtacatattaaatgaatatgttaggtggtatttgagtagtctaaagttgatcctctaccaaggatgc |
208 |
Q |
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| T |
31864458 |
acttattttagataagtaattaatacatatgatgtacatattaaatgaatctgttaggtggtatttgagtagtctaaagttgatcctctaccaaggatgc |
31864557 |
T |
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| Q |
209 |
atggtgcaacctactgtaaagtggttggattaagagagaattatttatgtcttaagaaaataaatttcaatcaagagtggttgcagaaccgttggatata |
308 |
Q |
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| T |
31864558 |
atggtgcaacctactgtaaagtggttggattaagagagaattatttatgtcttaagaaaataaatttcaatcaagagtggttgcagaaccgttggatata |
31864657 |
T |
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| Q |
309 |
tttcaatcacaattgcaattagagcttcatcgtcatagtctttag |
353 |
Q |
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| T |
31864658 |
tttcaatcacaattgcaattagagcttcatcgtcatagtctttag |
31864702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 31933354 - 31933595
Alignment:
| Q |
24 |
ttgaatttgattatttcttttagacaatttaaaatcgaaataaactataagaataagtaatttgaaaaattgatgagcttccttgctacacttattttag |
123 |
Q |
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| T |
31933354 |
ttgaatttgagtatttcttttggacaatttacgatcgaaataaattataagaataaataatttgaaaaatcgatgagtttacttgctatacttattgtaa |
31933453 |
T |
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| Q |
124 |
ataagtaatacatatgatgtacatattaaatgaata-tgttaggtggtatttgagtagtctaaagttgatcctctaccaaggatgcatggtgcaacctac |
222 |
Q |
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| T |
31933454 |
ataagtatta-----tatgtacatatt-aatgaatattgttaggttgtatgtgtgtagtc----------------caaatgatgcatggtgcagcctac |
31933531 |
T |
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| Q |
223 |
tgtaaagtggttggattaagagagaattatttatgtcttaagaaaataaatttcaatcaagagt |
286 |
Q |
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| T |
31933532 |
tgcagagtggttgggttaagagagaattatttatttcttgggaaaataaatttaaatcgagagt |
31933595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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