View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_15 (Length: 328)
Name: NF3927_low_15
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 42836477 - 42836181
Alignment:
| Q |
13 |
catcatctaagaaacgttaaaactaataatttttt-gaacacttacatgaatttttcgacatgtgtcaaacaagtgtcatacgggtgttagacaccaaca |
111 |
Q |
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| T |
42836477 |
catcatctaagaaacgttaaaactaataatttttttgaacacttacatgaatttttcgacatgtgtcaaacaagtgtcatacgggtgttagacaccaaca |
42836378 |
T |
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| Q |
112 |
catgtcgaataccatgtcacgtttaattctataggtggttgtgtctcgtaatgcaacaagaaattaatcatattatccgaataaatttctgtttgcataa |
211 |
Q |
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| T |
42836377 |
catgtcgaataccatgtcacgtttaattctataggtggttgtgtctcgtaatgcaacaagaaattaatcatattatccgaataaatttctgtttgcataa |
42836278 |
T |
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| Q |
212 |
taattgtagagatcgtgcactgccatcaaacttagcgtcctcccattttacaaaggttcagggatatgagcctttaaatgtaccaggtaaggatatt |
308 |
Q |
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| T |
42836277 |
taattgtagagatcgtgcactgccatcaaacttagcgtcctcccattttacaaaggttcagggatatgagcctttaaatgtaccaggtaaggatatt |
42836181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 42820280 - 42820232
Alignment:
| Q |
234 |
ccatcaaacttagcgtcctcccattttacaaaggttcagggatatgagc |
282 |
Q |
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| T |
42820280 |
ccatcaaacttggtgtcctcccattttacaaaggtccagggatatgagc |
42820232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 42503550 - 42503492
Alignment:
| Q |
234 |
ccatcaaacttagcgtcctcccattttacaaaggttcagggatatgagcctttaaatgt |
292 |
Q |
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| T |
42503550 |
ccatcaaatatagcttcatcccactttacaaaggtccagggatatgagcctttaaatgt |
42503492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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