View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3927_low_16 (Length: 317)
Name: NF3927_low_16
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_16 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 2620130 - 2620428
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2620130 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatatactt |
2620229 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620230 |
tttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
2620329 |
T |
|
| Q |
201 |
aggttagtgttgattgcttttgccacaatgcgaatatacaaagtttattaatcagttctttctcatcaaaaggcttacctaaaaacaaaatagtagtac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620330 |
aggttagtgttgattgcttttgccacaatgcgaatatacaaagtttatcgatcagttctttctcatcaaaaggcttacctaaaaacaaaatagtagtac |
2620428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2572618 - 2572410
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2572618 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcattaaggagaatatactt |
2572519 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2572518 |
tttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
2572419 |
T |
|
| Q |
201 |
aggttagtg |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
2572418 |
aggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2432855 - 2433081
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2432855 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatatactt |
2432954 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
2432955 |
tttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgatactc |
2433054 |
T |
|
| Q |
201 |
aggttagtgttgattgcttttgccaca |
227 |
Q |
| |
|
||||||||||| ||| |||||| |||| |
|
|
| T |
2433055 |
aggttagtgttaattacttttgtcaca |
2433081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2448722 - 2448930
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2448722 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatatactt |
2448821 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448822 |
tttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
2448921 |
T |
|
| Q |
201 |
aggttagtg |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
2448922 |
aggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2677454 - 2677228
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2677454 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattatggagaatatactt |
2677355 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2677354 |
tttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaaggatatgatactc |
2677255 |
T |
|
| Q |
201 |
aggttagtgttgattgcttttgccaca |
227 |
Q |
| |
|
||||||||||| ||| |||||| |||| |
|
|
| T |
2677254 |
aggttagtgttaattacttttgtcaca |
2677228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2586440 - 2586661
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2586440 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcatcaaggagaatatactt |
2586539 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2586540 |
tttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaaggatatgatactc |
2586639 |
T |
|
| Q |
201 |
aggttagtgttgattgcttttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2586640 |
aggttagtgttgattgcttttg |
2586661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2600196 - 2599989
Alignment:
| Q |
1 |
tgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2600196 |
tgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatatactt |
2600097 |
T |
|
| Q |
101 |
tttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2600096 |
tttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttgccacaagtatatgatactc |
2599997 |
T |
|
| Q |
201 |
aggttagt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
2599996 |
aggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 2645012 - 2644808
Alignment:
| Q |
5 |
attcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatactttttg |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2645012 |
attcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatatactttttg |
2644913 |
T |
|
| Q |
105 |
gaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactcaggt |
204 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2644912 |
gaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttgccacaaggatatgatacgcaggt |
2644813 |
T |
|
| Q |
205 |
tagtg |
209 |
Q |
| |
|
||||| |
|
|
| T |
2644812 |
tagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 17872791 - 17872589
Alignment:
| Q |
2 |
gctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatatacttt |
101 |
Q |
| |
|
||||||| ||| ||||| |||| ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| ||||||||| ||| |
|
|
| T |
17872791 |
gctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaagagaatataattt |
17872692 |
T |
|
| Q |
102 |
ttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgatactca |
201 |
Q |
| |
|
|||| | ||| ||||||| | || || ||||| || ||||| ||| || ||||||||| |||||||||| ||| | || ||||| || ||||||| |
|
|
| T |
17872691 |
ttggtaaagaagatgctaccgaagatgagattgttgaagctgcgaaaatttgtaatgctcatgatttcatttctttgcttcctcaaggttacaatactca |
17872592 |
T |
|
| Q |
202 |
ggt |
204 |
Q |
| |
|
||| |
|
|
| T |
17872591 |
ggt |
17872589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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