View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_18 (Length: 306)
Name: NF3927_low_18
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 2256201 - 2256384
Alignment:
| Q |
106 |
ttacctccaaaatatcatgagtccttttcatgttaatcctacaaagatcctcacaaacaactctaacaacttccgatcttcgccaccgttcatgaattcc |
205 |
Q |
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| T |
2256201 |
ttacctccaaaatatcatgagtccttttcatgttaatcctacaaagatcctcacaaacaactctaacaacttccgatcttcgccaccgttcatgaattcc |
2256300 |
T |
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| Q |
206 |
attaacaatcccttccgttacaccggctttcccaaccttaatcttctgcttcatctgataccctaattctctcaacctcaatat |
289 |
Q |
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| T |
2256301 |
attaacaatcccttccgttacaccggctttcccaaccttaatcttctgcttcatctgataccctaattctctcaacctcaatat |
2256384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2256103 - 2256143
Alignment:
| Q |
1 |
tcaatgagtatcactaatctatttatccaattcaaccaact |
41 |
Q |
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| T |
2256103 |
tcaatgagtatcactaatctatttatccaattcaaccaact |
2256143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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