View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_19 (Length: 282)
Name: NF3927_low_19
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 21055046 - 21054793
Alignment:
| Q |
18 |
catattgcctacctaaggagcaaagaccctcaatgagcgaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055046 |
catattgcctacctaaggagcaaagaccctcaatgagcaaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggct |
21054947 |
T |
|
| Q |
118 |
tgcctcaagatactttctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21054946 |
tgcctcaagatactttctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcagccatgcaatttacctttttcgacatcttgttcaag |
21054847 |
T |
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| Q |
218 |
ctctcgagcactgatgttgaatttcctacaccacccaggtttttcaagagaata |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21054846 |
ctctcgagcactgatgttgaatttcctacaccacccaggtttttcaagagaata |
21054793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 26366875 - 26367128
Alignment:
| Q |
18 |
catattgcctacctaaggagcaaagaccctcaatgagcgaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggct |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||| | || ||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26366875 |
catattgcctacctaaggaacaaagaccctcaatgagcaaattgtaactgtttgcagaaggccaatatgatttaattgacatttgttccaaaagttggct |
26366974 |
T |
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| Q |
118 |
tgcctcaagatactttctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaag |
217 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26366975 |
tgcctgaagatactttccctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaag |
26367074 |
T |
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| Q |
218 |
ctctcgagcactgatgttgaatttcctacaccacccaggtttttcaagagaata |
271 |
Q |
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|| |||||||| || || ||||||||||||| || | |||||||||||||||| |
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| T |
26367075 |
ctttcgagcaccgacgtcgaatttcctacactacgtatgtttttcaagagaata |
26367128 |
T |
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