View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_2 (Length: 646)
Name: NF3927_low_2
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 384 - 630
Target Start/End: Complemental strand, 43395416 - 43395170
Alignment:
| Q |
384 |
tagtaatcattagtattttgttagtacttaaataacctttcaatacttgttggggcttaacattcatcattttgaataaattaacaaaacgaacaagaaa |
483 |
Q |
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| T |
43395416 |
tagtaatcattagtattttgttagtacttaaataacctttcaatacttgttggggcttaacattcatcattttgaataaattaacaaagcgaacaagaaa |
43395317 |
T |
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| Q |
484 |
tactgtgaaacgaattagagagattcaatgaattacatgtggaaagagaactaacgacatttgctagccatgaacggagcaaaacgttaatatgcccaca |
583 |
Q |
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| T |
43395316 |
tattgtgaaacgaattagagagattcaatgaattacatgtggaaagagaactaacgacatttgctagccatgaacggagcaaaacgttaatatgcccaca |
43395217 |
T |
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| Q |
584 |
gaaaggaatatctcacgcacgtagaatctcacatatagcctatagtg |
630 |
Q |
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| T |
43395216 |
ggaaggaatatctcacgcacgtagaatctcacatatagcctatagtg |
43395170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 43396108 - 43395930
Alignment:
| Q |
13 |
aatattgaaggagtatgggttgagttgcacatacacaatgtaatgtttgttaagtcatctaagtttaaggtatactcgttaagagcagtttctcaccgat |
112 |
Q |
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| T |
43396108 |
aatattgaaggagtatgggttgagttgcacatacacaatgtaatgtttgttaagtcatctaagtttaaggtatactccttgagagcagtttaccactgat |
43396009 |
T |
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| Q |
113 |
cctcttttctttcnnnnnnnnatcaagtagtttagtggttagaattcatacgagggacaccgatcctcttttattaacac |
192 |
Q |
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| T |
43396008 |
cctcttttctttc-tttttttatcaagtagtttagtggttagaatttatacgagggacaccgatcctcttttattaacac |
43395930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 257 - 373
Target Start/End: Complemental strand, 43395862 - 43395747
Alignment:
| Q |
257 |
gagggaaattcacttatgtgctattagtaattatgttcnnnnnnnnnnagaaaattagttattatgttgtttatggaatactgatattggacctgtttac |
356 |
Q |
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| T |
43395862 |
gagggaagttcacttatgtgctattagtaattatgttcttttttttt-agaaaattagttattatgttgtttatggaatactgatattggacctgtttac |
43395764 |
T |
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| Q |
357 |
aattctgatgtgataat |
373 |
Q |
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| T |
43395763 |
aattctgatgtgataat |
43395747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 388
Target Start/End: Complemental strand, 43395748 - 43395702
Alignment:
| Q |
342 |
attggacctgtttacaattctgatgtgataataaatgataaatagta |
388 |
Q |
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| T |
43395748 |
attggacctgtttacaattctgatgtgataataaatgataaatagta |
43395702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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