View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_21 (Length: 248)
Name: NF3927_low_21
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 54220220 - 54219990
Alignment:
| Q |
1 |
atatatatgatgcatggaaagttaatattttgttatcttatgcactgaagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtt |
100 |
Q |
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| T |
54220220 |
atatatatgatgcatggaaagttaatattttgttatcttatgcactgaagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtt |
54220121 |
T |
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| Q |
101 |
taagttaccccataatttctcatcttctcactcattgaataagttgtatttagaatctggcgtccatatgtttatacctgatggtatttgcttcacaaat |
200 |
Q |
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| T |
54220120 |
taagttaccccataatttctcatcttctcactcattgaataagttgtatttagaatctggcgtccatatgtttatacctgatggtatttgcttcccaaat |
54220021 |
T |
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| Q |
201 |
ctgaagacattatatctttcacgtctttcct |
231 |
Q |
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| T |
54220020 |
ctgaagacattatatctttcacgtctttcct |
54219990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 17594279 - 17594481
Alignment:
| Q |
29 |
tttgttatcttatgcactgaagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtttaagttaccccataatttctcatcttct |
128 |
Q |
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| T |
17594279 |
tttgttatcttcagcattgatgcacaaactccttgatcttaaactttccctagaccatacatttgctaggtttgtgttacccaataatttctcagcatcc |
17594378 |
T |
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| Q |
129 |
cactcattgaataagttgtatttagaatctggcgtccatatgtttatacctgatggtatttgcttcacaaatctgaagacattatatctttcacgtcttt |
228 |
Q |
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| T |
17594379 |
caatcattgaataagttgtgtttagaatttggtttcattctatatatacctgatggtatacgtttccctaacttgaagacgttatatctttcacatcttt |
17594478 |
T |
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| Q |
229 |
cct |
231 |
Q |
| |
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||| |
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| T |
17594479 |
cct |
17594481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 14729208 - 14729006
Alignment:
| Q |
29 |
tttgttatcttatgcactgaagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtttaagttaccccataatttctcatcttct |
128 |
Q |
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||||||||||| ||| ||| ||||||| ||||||||||||||||||||||| | | | | |||||||| ||||||| ||||||||||| | || |
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| T |
14729208 |
tttgttatcttcagcattgatgcacaaactccttgatcttaaactttccctagaccaaacatttgctaggtttgtgttacccaataatttctcagcatcc |
14729109 |
T |
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| Q |
129 |
cactcattgaataagttgtatttagaatctggcgtccatatgtttatacctgatggtatttgcttcacaaatctgaagacattatatctttcacgtcttt |
228 |
Q |
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|| |||||||||||||||| ||||||| ||| || | | | ||||||||||||||| | ||| | || ||||||| ||||||||||||| ||||| |
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| T |
14729108 |
caatcattgaataagttgtgcttagaatttggtttcactctatatatacctgatggtatacgtttccctaacttgaagacgttatatctttcacatcttt |
14729009 |
T |
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| Q |
229 |
cct |
231 |
Q |
| |
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||| |
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|
| T |
14729008 |
cct |
14729006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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