View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_23 (Length: 242)
Name: NF3927_low_23
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 40260818 - 40260597
Alignment:
| Q |
18 |
aaatagagggatgcgtcgtattggaaagggttaacaacatctattgtagagtttgatgtagatagtatataaaatttatgtgtagatgtagaataatatt |
117 |
Q |
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| T |
40260818 |
aaatagagggatgtgtcgtattggaaagggttaacaacatctattgtagagtttgatgtagatagtatataaaatttatgtgtagatgtagaataatatt |
40260719 |
T |
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| Q |
118 |
gttgtattgtagctatatgtaatactaggatgatgtgcagtttatcgaacataatgagaaaaatgtcaccccaaaattaaaaggtgcattaatatttatc |
217 |
Q |
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| T |
40260718 |
gt---attgtagctatatgtaatactaggatgatgtgcagtttatcgaacataatgagaaaaatgtcaccccaaaattaaaaggtgcattaatatttatc |
40260622 |
T |
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| Q |
218 |
aataaggtgtgtgatcatatgaatt |
242 |
Q |
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| T |
40260621 |
aataaggtgtgtgatcatatgaatt |
40260597 |
T |
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