View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_24 (Length: 240)
Name: NF3927_low_24
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_24 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2619626 - 2619865
Alignment:
| Q |
1 |
cacagacagatcgatgacacatgtatcaatttgagagaaaatgaatcattttcatgtaatcacatgtgtcgacgacactgacacatgacaaacactggac |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619626 |
cacagacagatcaatgacacatgtatcaatttgagagaaaatgaatcattttaatgtaatcacatgtgtcgacgacactgacacatgacaaacactggac |
2619725 |
T |
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| Q |
101 |
acatcttcaatcagacgtgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtact |
200 |
Q |
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|| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2619726 |
acgccttcaatcagaagtgtcgatgctacaaagttgttaattatatattttttcctatgtggcagggctttaggagctggtctatcaaatgtgaagtact |
2619825 |
T |
|
| Q |
201 |
tctcagaggcaagtgttgcaggagaaagaataatggaaat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2619826 |
tctcagaggcaagtgttgcaggagaaagaataatggaaat |
2619865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 2585966 - 2586173
Alignment:
| Q |
35 |
gagaaaatgaatcattttcatgtaatcacatgtgtcgacg---acactgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctacaa |
131 |
Q |
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|||||||||||||||||| | ||||||||||||||| || ||| |||||| | ||| |||||||||||| | | ||||||| |||||||| |||||| |
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| T |
2585966 |
gagaaaatgaatcattttaaagtaatcacatgtgtcagcgtagacagtgacacgtaacagacactggacacaccattaatcagaagtgtcggttctacaa |
2586065 |
T |
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| Q |
132 |
agttgttaattatatat-tttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaa |
230 |
Q |
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| T |
2586066 |
agttgttgattatatatatttttcttatgtggcagggctttaggagctggtatgtcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaa |
2586165 |
T |
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| Q |
231 |
taatggaa |
238 |
Q |
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|||||||| |
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| T |
2586166 |
taatggaa |
2586173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 2677842 - 2677719
Alignment:
| Q |
118 |
tgtcggtgctacaaagttgttaattatata-ttttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgt |
216 |
Q |
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||||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2677842 |
tgtcgttgctaaatagttgttaattatataattttttcttatgtggtagggctttaggagctggtttatcaaatgtgaagtacttctcagaagcaagtgt |
2677743 |
T |
|
| Q |
217 |
tgcaggagaaagaataatggaaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
2677742 |
tgcaggagaaagaataatggaaat |
2677719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 2645403 - 2645284
Alignment:
| Q |
118 |
tgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgtt |
217 |
Q |
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|||||||| || || |||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
2645403 |
tgtcggtgttataatgttgttaattatatatttttccttatgtgacaggactttaggagctgttttatcaaatgtgaagtacttttcagaagcaagtgta |
2645304 |
T |
|
| Q |
218 |
gcaggagaaagaataatgga |
237 |
Q |
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|||||||||||||||||||| |
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| T |
2645303 |
gcaggagaaagaataatgga |
2645284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 2448374 - 2448457
Alignment:
| Q |
157 |
atgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatggaaat |
240 |
Q |
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||||| ||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2448374 |
atgtgacagggctgtaggagttagtttatcaaatgtgaagtacttctcagaagcaagtgttgcaggagaaagaataatggaaat |
2448457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 2600552 - 2600449
Alignment:
| Q |
137 |
ttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatgg |
236 |
Q |
| |
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||||||| ||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2600552 |
ttaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatgg |
2600453 |
T |
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| Q |
237 |
aaat |
240 |
Q |
| |
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|||| |
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| T |
2600452 |
aaat |
2600449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 2572986 - 2572885
Alignment:
| Q |
137 |
ttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatgg |
236 |
Q |
| |
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|||| ||||||||||| ||||| | ||||||||| ||| || |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2572986 |
ttaactatatatttttatttatgagacagggctttcggaactagtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatgg |
2572887 |
T |
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| Q |
237 |
aa |
238 |
Q |
| |
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|| |
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| T |
2572886 |
aa |
2572885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 2432484 - 2432588
Alignment:
| Q |
134 |
ttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataa |
233 |
Q |
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|||||||||||||| | || ||||| | |||||||| ||| || |||| |||||||||| ||||||| |||| |||||||| |||||||||||||||| |
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| T |
2432484 |
ttgttaattatatactgttccttatattatagggcttttggaacttgtttctcaaatgtgaggtacttcgcagaagcaagtgtggcaggagaaagaataa |
2432583 |
T |
|
| Q |
234 |
tggaa |
238 |
Q |
| |
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||||| |
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| T |
2432584 |
tggaa |
2432588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 36398525 - 36398559
Alignment:
| Q |
98 |
gacacatcttcaatcagacgtgtcggtgctacaaa |
132 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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| T |
36398525 |
gacacatcttcaatcagaagtgtcggtgctacaaa |
36398559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 8203892 - 8203940
Alignment:
| Q |
78 |
ctgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgc |
126 |
Q |
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| T |
8203892 |
ctgacacatgacaaacactggacacaccttctgtcagaagtgtcagtgc |
8203940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 16771289 - 16771345
Alignment:
| Q |
74 |
gacactgacacatgacaaacactggacacatcttcaatcagacgtgtcggtgctaca |
130 |
Q |
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| T |
16771289 |
gacacagacacatgttgaacactggacacaccttcaatcagaagtgtcgatgctaca |
16771345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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