View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3927_low_26 (Length: 234)
Name: NF3927_low_26
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44494912 - 44495132
Alignment:
| Q |
1 |
atagtgtattaacatttaacggtgcagttaaatattacccctggcctttgtaatgctataactaattaaaacttggaatatctacacaatttaagtgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44494912 |
atagtgtattaacatttaacggtgcagttaaatattacccctggcctttgtaatgctataactaattaaaacttggaatatctacacaatttaagtgttc |
44495011 |
T |
|
| Q |
101 |
cccctttctcttcatttgaagcacaaaaaagggttacaagtaattagtaatcaaactaaaccatgaaagctcttagcttaatcctcatattctccatcat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495012 |
ctcctttctcttcatttgaagcacaaaaaagggttacaagtaattagtaaacaaactaaaccatgaaagctcttagcttaatcctcatattctccatcat |
44495111 |
T |
|
| Q |
201 |
cactgccttctcacatgcaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44495112 |
cactgccttctcacatgcaac |
44495132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 44470338 - 44470484
Alignment:
| Q |
77 |
aatatctacacaatttaagtgttccccctttctcttcatttgaagcacaaaaaagggttacaagtaattagtaatcaaa---ctaaaccatgaaagctct |
173 |
Q |
| |
|
|||||||| |||||||| ||||||| | ||||||||| ||| ||||||||||||| ||||||||||||| ||| | || ||||||||||||| |||| |
|
|
| T |
44470338 |
aatatctaaacaatttaggtgttcctcttttctcttctcttggagcacaaaaaagg-ttacaagtaattaataaccgaaagactaaaccatgaaatctct |
44470436 |
T |
|
| Q |
174 |
tagcttaatcctcatattctccatcatcactgccttctcacatgcaac |
221 |
Q |
| |
|
|| ||||||| ||| |||||||||||| || |||||||||||||||| |
|
|
| T |
44470437 |
taccttaatcttcacattctccatcattgctaccttctcacatgcaac |
44470484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 44488777 - 44488839
Alignment:
| Q |
157 |
taaaccatgaaagctcttagcttaatcctcatattctccatcatcactgccttctcacatgca |
219 |
Q |
| |
|
||||| |||||| |||||| ||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
44488777 |
taaactatgaaaactcttaccttaatcttcacattctccatcattgttgccttctcacatgca |
44488839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University