View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_3 (Length: 518)
Name: NF3927_low_3
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 52577689 - 52577183
Alignment:
| Q |
1 |
tttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttggagaggtaagggtgctcnnnnnnnnctcta |
100 |
Q |
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| T |
52577689 |
tttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggtaagggtgctcttttttt--tcaa |
52577592 |
T |
|
| Q |
101 |
taaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaag |
200 |
Q |
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| T |
52577591 |
taaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaag |
52577492 |
T |
|
| Q |
201 |
aagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttc |
300 |
Q |
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| T |
52577491 |
aagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttc |
52577392 |
T |
|
| Q |
301 |
tcatttgaaattaannnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttatt |
400 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
52577391 |
tcatttgaaattaatttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttatt |
52577292 |
T |
|
| Q |
401 |
ctctacagactgtgactgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccac |
500 |
Q |
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| T |
52577291 |
ctctacagactgtgacggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccac |
52577192 |
T |
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| Q |
501 |
aggttctgc |
509 |
Q |
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| T |
52577191 |
aagttctgc |
52577183 |
T |
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