View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_5 (Length: 434)
Name: NF3927_low_5
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Complemental strand, 21748854 - 21748450
Alignment:
| Q |
11 |
atgaaagcacacaaatagccggatatagtccagtataaactcgttacggcagaacagaacaactaaaattacttggtaaagattaaagacaaccaatatt |
110 |
Q |
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| T |
21748854 |
atgaaagcacacaaatagccggatatagtccagtataaactcgttacggcataacagaacaactaaaattacttggtaaagattaaagacaaccaatatt |
21748755 |
T |
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| Q |
111 |
tgcttataattagagacgagtaaataaatgggcatcaagaaatgcaaactcatttctgtaacatctatcgcaattccagacctttcaatcaaaacggtat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21748754 |
tgcttataattagagacgagtaaataaatgggcatcaagaaatgcaaactcacttttgtaacatctatcgcaattccagacctttcaatcaaaacggtat |
21748655 |
T |
|
| Q |
211 |
caa--cactcactacgaacacccaagaaacaagggnnnnnnnngctaccaatttactataatctgaaacatcatagcagccacaaattccactattcata |
308 |
Q |
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||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21748654 |
caactcactcactacaaacacccaagaaacaagggaaaaaaaagctaccaatttactataatctgaaacatcatagcagccacaaattccactattcata |
21748555 |
T |
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| Q |
309 |
gtgctatcaatttataatatagcagcgacaaattcgaatatccaacaatgctatcaattttctatattttactacccaaagaatctgaaacatttttcaa |
408 |
Q |
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| T |
21748554 |
gtgctatcaatttatcatatagcagcgacaaattcg-------aacaatgctatcaattttttatattttactacccaaagaatctgaaacatttttcaa |
21748462 |
T |
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| Q |
409 |
catggaaaaata |
420 |
Q |
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|||||||||||| |
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| T |
21748461 |
catggaaaaata |
21748450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 46938308 - 46938351
Alignment:
| Q |
155 |
caaactcatttctgtaacatctatcgcaattccagacctttcaa |
198 |
Q |
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| T |
46938308 |
caaactcacttctgtaacatctttggcaattccagacctttcaa |
46938351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 861378 - 861338
Alignment:
| Q |
156 |
aaactcatttctgtaacatctatcgcaattccagacctttc |
196 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
861378 |
aaactcacttctgtaacatctttagcaattccagacctttc |
861338 |
T |
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