View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3927_low_8 (Length: 380)
Name: NF3927_low_8
Description: NF3927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3927_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 45 - 370
Target Start/End: Original strand, 40218474 - 40218799
Alignment:
| Q |
45 |
gtatatttggatacactacacaataaagagtgcatgacttagaaaattcccaaatttgcatgccataactttttatttgttggttcagaaataggaatac |
144 |
Q |
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| T |
40218474 |
gtatatttggatacactacacaataaagagtgcatgacttagaaaattcccaaatttgcatgccataactttttatttgttggttcagaaataggaatac |
40218573 |
T |
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| Q |
145 |
taattttttcttcctccatttgttcaacagggtggagctttttagagcgtgtgtagatcaaaatgaaaggaattggagnnnnnnntaacacaattcaaaa |
244 |
Q |
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| T |
40218574 |
taattttttcttcctccatttgttcaacagggtgaagctttttagagcgtgtgtagatcaaaatgaaaggaattggagaaaaaaataacacaattcaaaa |
40218673 |
T |
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| Q |
245 |
cacatttttcttgttttcgttatcctctttgagttgtcatagtcctaatttaattttcatctttattactaggtcatagtctatctaccgaagaaagttg |
344 |
Q |
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| T |
40218674 |
cacatttttcttgttttcgttatcctctttgagttgtcatagtcctaatttaattttcatctttattactaggtcatagtctatctaccgaagaaagttg |
40218773 |
T |
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| Q |
345 |
acacatgtgcacgtttatgtcctatg |
370 |
Q |
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| T |
40218774 |
acacatgtgcacgtttatgtcctatg |
40218799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 23107421 - 23107345
Alignment:
| Q |
59 |
actacacaataaagagtgcatgacttagaaaattcccaaatttgcatgccataactttttatttgttggttcagaaata |
137 |
Q |
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| T |
23107421 |
actactcaataaaaagtgcatccct-agaaaattttcaaatttgcacgc-ataactttttatttgttggttcagaaata |
23107345 |
T |
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