View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3928_high_3 (Length: 242)
Name: NF3928_high_3
Description: NF3928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3928_high_3 |
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| [»] chr4 (9 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 30228798 - 30229036
Alignment:
| Q |
7 |
caagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgtcacatagttactaa |
106 |
Q |
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| T |
30228798 |
caagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgttacatagttactaa |
30228897 |
T |
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| Q |
107 |
catatttgtcatataattcac---atgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatct |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30228898 |
catatttgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatct |
30228997 |
T |
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| Q |
204 |
catcttaccctctacatcttttacctgtgcaaatcaatt |
242 |
Q |
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| T |
30228998 |
catcttaccctctacatcttttacctgtgcaaatcaatt |
30229036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 30048659 - 30048897
Alignment:
| Q |
7 |
caagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgtcacatagttactaa |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||||| ||||||| ||||| |
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| T |
30048659 |
caagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgtttttttagctagaatacttgttacatagtcactaa |
30048758 |
T |
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| Q |
107 |
catatttgtcatataattcacatga---tgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatct |
203 |
Q |
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| T |
30048759 |
gataattgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcgaccttttgccatct |
30048858 |
T |
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| Q |
204 |
catcttaccctctacatcttttacctgtgcaaatcaatt |
242 |
Q |
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| T |
30048859 |
catctcaccctctttgtcttttacctgtgcaaattaatt |
30048897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 30063000 - 30063238
Alignment:
| Q |
7 |
caagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgtcacatagttactaa |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||||| ||||||| ||||| |
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| T |
30063000 |
caagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgtttttttagctagaatacttgttacatagtcactaa |
30063099 |
T |
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| Q |
107 |
catatttgtcatataattcacatga---tgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatct |
203 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30063100 |
gataattgtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcgaccttttgccatct |
30063199 |
T |
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| Q |
204 |
catcttaccctctacatcttttacctgtgcaaatcaatt |
242 |
Q |
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||||| ||||||| |||||||||||||||||| |||| |
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| T |
30063200 |
catctcaccctctttgtcttttacctgtgcaaattaatt |
30063238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 30032420 - 30032651
Alignment:
| Q |
14 |
cattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgtcacatagttactaacatattt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||| | ||| ||| || |
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| T |
30032420 |
cattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttcagctagaatacttgttacatagtcattaaaataatt |
30032519 |
T |
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| Q |
114 |
gtcatataattcacatga---tgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatctcatctta |
210 |
Q |
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| T |
30032520 |
gtcatataattcacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcgacctttcgccatctcatctta |
30032619 |
T |
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| Q |
211 |
ccctctacatcttttacctgtgcaaatcaatt |
242 |
Q |
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|||||| |||||||||| ||||||| |||| |
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| T |
30032620 |
ccctctttgtcttttacctttgcaaattaatt |
30032651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 30220261 - 30220061
Alignment:
| Q |
12 |
agcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgtcacatagttactaacatat |
111 |
Q |
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||||||| |||||||||| || || | ||||||||||||||| ||||||| ||| ||||||||| | ||||||||||||| ||||||| ||||| ||| |
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| T |
30220261 |
agcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataa |
30220162 |
T |
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| Q |
112 |
ttgtcatataattcacatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaaccttttgccatctcatcttac |
211 |
Q |
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|| ||||||||| ||||||| ||| |||||||||||||| | |||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
30220161 |
ttatcatataatattgatgatgagtttgtggtttcaggaaatttaggaatctttatgtgctcttcaagcttcacttcaaccctttgccatctcatcttac |
30220062 |
T |
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| Q |
212 |
c |
212 |
Q |
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| T |
30220061 |
c |
30220061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 30264462 - 30264513
Alignment:
| Q |
8 |
aagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
59 |
Q |
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||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
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| T |
30264462 |
aagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
30264513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 30280829 - 30280766
Alignment:
| Q |
12 |
agcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttctt |
75 |
Q |
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||||||| |||||||||| || || | ||| ||||||||||||||||| | ||||||||||||| |
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| T |
30280829 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctt |
30280766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 30287726 - 30287675
Alignment:
| Q |
8 |
aagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
59 |
Q |
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||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
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| T |
30287726 |
aagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
30287675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 30304427 - 30304490
Alignment:
| Q |
12 |
agcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttctt |
75 |
Q |
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||||||| |||||||||| || || | ||| ||||||||||||||||| | ||||||||||||| |
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| T |
30304427 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctt |
30304490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 72582 - 72631
Alignment:
| Q |
20 |
ttgttggataattgataatatgaatttcccaaagtggtttattttgtggt |
69 |
Q |
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|||||||||| || ||||||||||||||||| |||||| ||| ||||||| |
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| T |
72582 |
ttgttggatatttaataatatgaatttcccatagtggtctatcttgtggt |
72631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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