View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3928_low_1 (Length: 470)
Name: NF3928_low_1
Description: NF3928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3928_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 28818203 - 28818644
Alignment:
| Q |
19 |
agaggatctacaaactgcaacacccaaaattcctggtttctttgcagctaccaaaacacaagttgttggaactggaaatgcaatctatgctattgcacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28818203 |
agaggatctacaaactgcaacaccaaaaattcctggtttctttgcagctaccaaaacacaagttgttggaactggaaatgcaatctatgctattgcacaa |
28818302 |
T |
|
| Q |
119 |
tgtgctgaaacagtcactcaaagtggttgtttagattgcctgacagttggatttaccaacatacagagctgttttcctaatactgatggtagggcatttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28818303 |
tgtgctgaaacagtcactcaaagtggctgtttagattgcctgacagttggatttaccaacatacagagctgttttcctaatactgatggtagggcatttg |
28818402 |
T |
|
| Q |
219 |
atgctggttgttttatgagatactcagagaaatccttctttgctgataaccagaccattgatattgcacccttcttaaaacaaggtaaaattagaatgct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28818403 |
atgctggttgttttatgagatactcagagaaatccttctttgctgataaccagaccattgatattgcacccttcttaaaacaaggtaaaattagaatgct |
28818502 |
T |
|
| Q |
319 |
ttctttatttggattttagatgaagagtgaataggaaaattggttctcgaaattgtatgcatcggccaaatagtttatgatctttccaaattggcaaata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28818503 |
ttctttatttggattttagatgaagagtgaataggaaaattggttctcgaaattgtatgcatcggccaaatagtttatgatctttccaaattggcaaata |
28818602 |
T |
|
| Q |
419 |
tatccttggaattgtaaaatgtcattttaagtaatccctttg |
460 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28818603 |
tacccttggaattgtaaaatgtcattttaagtgatccctttg |
28818644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 99 - 282
Target Start/End: Original strand, 28833985 - 28834168
Alignment:
| Q |
99 |
caatctatgctattgcacaatgtgctgaaacagtcactcaaagtggttgtttagattgcctgacagttggatttaccaacatacagagct-gttttccta |
197 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||| | || |||| || |||||| |
|
|
| T |
28833985 |
caatttatgccattgcacagtgtgctgaaacagtcactgaaagtggttgtttagattgtttgacagttggatacaacaacttgca-agcttgtcttccta |
28834083 |
T |
|
| Q |
198 |
atactgatggtagggcatttgatgctggttgttttatgagatactcagagaaatccttctttgctgataaccagaccattgatat |
282 |
Q |
| |
|
| || |||||||| |||| |||||| || |||||||||||||||||||||| | |||| ||||||||||| |||||||||||||| |
|
|
| T |
28834084 |
acacagatggtagagcatatgatgcagggtgttttatgagatactcagagacacccttttttgctgataatcagaccattgatat |
28834168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 111 - 282
Target Start/End: Original strand, 28825118 - 28825289
Alignment:
| Q |
111 |
ttgcacaatgtgctgaaacagtcactcaaagtggttgtttagattgcctgacagttggatttaccaacatacagagctgttttcctaatactgatggtag |
210 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||| ||| || ||||||||| | ||| | || | ||| ||||||| | ||||||||| |
|
|
| T |
28825118 |
ttgcacagtgtgctgaaacagtcactgaaagtggttgtttagcttgtttggcagttggatacagtaacttgcaaacttgtcttcctaacagtgatggtag |
28825217 |
T |
|
| Q |
211 |
ggcatttgatgctggttgttttatgagatactcagagaaatccttctttgctgataaccagaccattgatat |
282 |
Q |
| |
|
|||| |||||| || |||||||||||||| ||||||| | |||| ||||||||||| |||||||||||||| |
|
|
| T |
28825218 |
agcatatgatgcagggtgttttatgagatattcagagacacccttttttgctgataatcagaccattgatat |
28825289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University