View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3928_low_2 (Length: 300)
Name: NF3928_low_2
Description: NF3928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3928_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 9162188 - 9161994
Alignment:
| Q |
1 |
tagtataatggccttctcttgttcgtgtaaactggcataaataattactgctctttttcatattatctggttggattgatagttaaattggtcagaacat |
100 |
Q |
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| T |
9162188 |
tagtataattgccttctcttgttcgtgtatactggcataagtatttactgctctttttcatattatctggttggattgatagttaaattggtcagaacat |
9162089 |
T |
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| Q |
101 |
tgaccaggaactctcaacagtttaatttaaaaacctggctgaacatcgcacgtgcttttctgttatgtgcaggataagaaagcttttggtaatat |
195 |
Q |
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| T |
9162088 |
tgaccaggaactctcaacagtttaatttaaaaacctggctgaacatcgcacgtgcttttctgttatgtgcaggataagaaagcttttggtaatat |
9161994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9149524 - 9149265
Alignment:
| Q |
1 |
tagtataatggccttctcttgttcgtgtaaactggcataaataattactg-ctctttttcatattatctggttggattgatagttaaattggtcagaaca |
99 |
Q |
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||||||||| |||||||||||||||| || ||| ||||| || ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
9149524 |
tagtataattgccttctcttgttcgtata--ctg-cataactatttactttctctttttcatgttatctggttggattgatagt--aattggtcagaaca |
9149430 |
T |
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| Q |
100 |
ttgaccaggaactctcaacagtttaattta--aaaacctggctgaacatcgcacgtgcttttctgttatgtgcaggataagaaagcttttggtaatatcc |
197 |
Q |
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||||||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
9149429 |
ttgaccaggaactctcatcagtttatttttttaaaacatggctgaacattgcacgtgcttgtttgttatgtgcaggataaggaagcttttgctaatatcc |
9149330 |
T |
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| Q |
198 |
tgaggacaatctccaagaaaaagataactaatggttccatctatgtagtcctaagagagaagtaa |
262 |
Q |
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||| || |||||| |||| | ||| ||| ||||| |||| ||||| |||| |||||||||||| |
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| T |
9149329 |
tgaagagaatctctaagatacagaaaaccaatggatccagttatgttatcctgagagagaagtaa |
9149265 |
T |
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