View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_10 (Length: 703)
Name: NF3929_high_10
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Complemental strand, 36841725 - 36841185
Alignment:
| Q |
20 |
ttaacttgtttgttagtgacatatacatggagatga-ggtctggtagatgcaacatggaaagaatttttcaccaccacaaaagtattagctattgaataa |
118 |
Q |
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| T |
36841725 |
ttaacttgtttgttagtgacatatacatggagatgaaggtctggtagatgcaacatggaaagaatttttcaccaccacaaaagtattagctactgaataa |
36841626 |
T |
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| Q |
119 |
tgtgtcacaaattgaagtgaaaaattgataagttcttaaaattgatatgacatagtatgactcaaataaattgagaccatctcatagtgttactgaagat |
218 |
Q |
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| T |
36841625 |
tgtgtcacaaattgaagtgaaaaattgataagttcttaaaattgatatgacatagtatgactcaaataaattgagaccatctcatagtgttactgaagat |
36841526 |
T |
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| Q |
219 |
gttgatattacaacaaaatataataaaatttggccacaattgcagttgtgatgctatctatcacatagatctccaaaatatttatttttgtagaccccaa |
318 |
Q |
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| T |
36841525 |
gttgatattacaacaaaatataataaaatttggccacaattgcagttgtgatgctatctatcacatagatctccaaaatatttatttttgtagaccccaa |
36841426 |
T |
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| Q |
319 |
tttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataatcaccacactgaaatggccatttatgaagtcaaaataatgaa |
418 |
Q |
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| T |
36841425 |
tttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataa--accacgctgaaatggccatttatgaagtcaaaataatgaa |
36841328 |
T |
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| Q |
419 |
agcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttcaagctttcttgaatttctcttagcctcaagnnnnnn |
518 |
Q |
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| T |
36841327 |
agcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttcaagctttcttgaatttctcttagcctcaagaaaaaa |
36841228 |
T |
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| Q |
519 |
ntcaagactaatctacactcattgctcatgaatagggagcagc |
561 |
Q |
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| T |
36841227 |
atcaagactaatctacactcattgctcatgaatagggagcagc |
36841185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 595 - 693
Target Start/End: Complemental strand, 36841151 - 36841053
Alignment:
| Q |
595 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
693 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36841151 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
36841053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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