View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_104 (Length: 224)
Name: NF3929_high_104
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_104 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 4773455 - 4773640
Alignment:
| Q |
23 |
gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4773455 |
gggttatgatggtctaatttgtaagagcacgatggcagttttcaatttggtttttttcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
4773554 |
T |
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| Q |
123 |
gctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaatt |
209 |
Q |
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| T |
4773555 |
gctctctagattggaatcaagttgtgttgggaggtcggctat-aaaaaacttatgtgttactctaactctcttcatgtggggcaatt |
4773640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 36353946 - 36353816
Alignment:
| Q |
23 |
gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
122 |
Q |
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| T |
36353946 |
gggttatggtggtctaattcgtaag--cactatgacagttttcaatttgatttctttggta-gagtggggatctctaatatccttcatgctgagatttag |
36353850 |
T |
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| Q |
123 |
gctctctagattggaatcaagttgtgttgggagg |
156 |
Q |
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| T |
36353849 |
gctctttagtttggaatcaagttgtgttgggagg |
36353816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 26487434 - 26487616
Alignment:
| Q |
23 |
gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
122 |
Q |
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|||||||| |||||||||| ||||| ||||| || | ||| ||| ||||||||| ||||||||||| |||||| |||||||| || | ||||||||||| |
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| T |
26487434 |
gggttatggtggtctaattagtaag--cacgacggcaatttccaacttggttttt-tcgaaagtgtggggatctttaatatccttcatgctgagattcaa |
26487530 |
T |
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| Q |
123 |
gctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaatt |
209 |
Q |
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||||||| ||||||||| |||||||||||||||| |||||| ||||||||||||||| |||| |||||||||| |||||| |
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| T |
26487531 |
gctctctggattggaattaagttgtgttgggaggcaggctat-aaaaaacttatgtgttactctgactctcttcatgtggtgcaatt |
26487616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 44404011 - 44403880
Alignment:
| Q |
22 |
cgggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctact-gagattc |
120 |
Q |
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||||| ||| |||||||||| ||||| |||||||| | |||||| ||||||||| |||||| | || ||||||||||||||| || | | ||||||| |
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| T |
44404011 |
cgggtgatggtggtctaattagtaag--cacgatggcaactttcaacttggttttt-tcgaaa-tatggggatctctaatatccttcatgccagagattc |
44403916 |
T |
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| Q |
121 |
aagctctctagattggaatcaagttgtgttgggagg |
156 |
Q |
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|||||||| |||||||||||| ||||||||||||| |
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| T |
44403915 |
tagctctctggattggaatcaaattgtgttgggagg |
44403880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 3241241 - 3241193
Alignment:
| Q |
25 |
gttatgatggtctaatttgtaagagcacgatggtagttttcaatttggttt |
75 |
Q |
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| T |
3241241 |
gttatgatggtctaatttgta--agcacgatggaagttttcaacttggttt |
3241193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 50654769 - 50654727
Alignment:
| Q |
113 |
tgagattcaagctctctagattggaatcaagttgtgttgggag |
155 |
Q |
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|||| |||||||||||| ||||||||||||||| ||||||||| |
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| T |
50654769 |
tgaggttcaagctctctggattggaatcaagttatgttgggag |
50654727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 2904431 - 2904339
Alignment:
| Q |
26 |
ttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
122 |
Q |
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||||| |||||||||||| ||| ||| |||| ||||||||| ||||||||| |||||| |||| |||||||||||||| || | ||||||||||| |
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| T |
2904431 |
ttatggtggtctaatttgcaag--cacaatggcagttttcaacttggttttt-tcgaaa-tgtggagatctctaatatccttcttgctgagattcaa |
2904339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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