View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_high_109 (Length: 210)
Name: NF3929_high_109
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_109 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 3615945 - 3616078
Alignment:
| Q |
72 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacata--agggataatggattttaaacattatatgacccttgtaaattaaataaaggac |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3615945 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaatggattttaaacattatatgacccttctaaattaaataaaggac |
3616044 |
T |
|
| Q |
170 |
gatgaaagaggacactattgatgattctgtgctc |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
3616045 |
gatgaaagaggatgctattgatgattctgtgctc |
3616078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 52077230 - 52077363
Alignment:
| Q |
72 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacata--agggataatggattttaaacattatatgacccttgtaaattaaataaaggac |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52077230 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaattgattttaattattatatgacccttgtaaattaaataaaggac |
52077329 |
T |
|
| Q |
170 |
gatgaaagaggacactattgatgattctgtgctc |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
52077330 |
gatgaaagaggacgctattgatgattctgtgctc |
52077363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 16756908 - 16756775
Alignment:
| Q |
72 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacata--agggataatggattttaaacattatatgacccttgtaaattaaataaaggac |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16756908 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaatggattttaaacattatatgacccttgtaaattaaataaaggac |
16756809 |
T |
|
| Q |
170 |
gatgaaagaggacactattgatgattctgtgctc |
203 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |
|
|
| T |
16756808 |
gatgaaagaggatgttattgatgattttgtgctc |
16756775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University