View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_17 (Length: 498)
Name: NF3929_high_17
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 43045301 - 43044821
Alignment:
| Q |
1 |
tattacaattgttttgaaaagtcacagattgtattgctatgctagtaaatacatatggagttatcgactgaaggatgataaattctgcaaaggacaatat |
100 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43045301 |
tattacaatttttttgaaa-gtcacagattgtattgctatgctagtaaatacatatggagttatcgacagaaggatgataaattctgcaaaggacaatat |
43045203 |
T |
|
| Q |
101 |
aaaaaacatgtcatactagctccccaatgtattccatccatgctagcaagctcagcacgaagtttctcaacttctcgggccatggaaaccatgtttttct |
200 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43045202 |
aaaaaacatgtcataccagctccccaatgtcttccatccatgctagcaagctcagcacgaagtttctcaacttctcgggccatggaaaccatgtttttct |
43045103 |
T |
|
| Q |
201 |
ccattgactgcctctgttccatgaactccatgtttgccttcttttcataatccaccattgttctataacacgaaaatgcaacattatcagttcaagaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43045102 |
ccattgactgcctctgttccatgaactccatgtttgccttcttttcataatccaccattgttctataacacgaaaatgcaacattatcagttcaagaaaa |
43045003 |
T |
|
| Q |
301 |
caaatgcggaaataccaaccaaaagcatgcttaaagatagaaaacgaaaaccctgttagcaatcaatccacaaacctagcacgcatcagttcttggtgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43045002 |
caaatgcggaaataccaaccaaaagcatgcttaaagatagaaaacgaaaaccctgttagcaatcaatccacaaacctagcacgcatcagttcttggtgca |
43044903 |
T |
|
| Q |
401 |
aaccatcaatctcagatctcatcgagggaatttgttgattatcagactgtaacctagcaacatctttcgttagtgtctgaac |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43044902 |
aaccatcaatctcagatctcatcgagggaatttgttgattatcagactgtaacctagcaacatctttcgttagtgtctgaac |
43044821 |
T |
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