View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_high_18 (Length: 496)

Name: NF3929_high_18
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_high_18
NF3929_high_18
[»] chr1 (7 HSPs)
chr1 (294-496)||(52077370-52077572)
chr1 (295-496)||(3616085-3616287)
chr1 (140-228)||(52077624-52077704)
chr1 (136-228)||(3616352-3616436)
chr1 (170-226)||(12666941-12666996)
chr1 (1-34)||(52077842-52077875)
chr1 (2-34)||(3616566-3616598)
[»] chr7 (3 HSPs)
chr7 (295-496)||(16756567-16756768)
chr7 (136-209)||(16756443-16756516)
chr7 (1-33)||(16756280-16756312)
[»] chr6 (1 HSPs)
chr6 (393-496)||(7309443-7309544)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 294 - 496
Target Start/End: Complemental strand, 52077572 - 52077370
Alignment:
Q  294 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52077572 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac 52077473  T
Q  394 cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 493  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52077472 cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 52077373  T
Q  494 ctc 496  Q
    |||    
T  52077372 ctc 52077370  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 295 - 496
Target Start/End: Complemental strand, 3616287 - 3616085
Alignment:
Q  295 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 394  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  3616287 tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc 3616188  T
Q  395 ctttcac-aaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 493  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3616187 ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcctttctgcttcttcccttcctt 3616088  T
Q  494 ctc 496  Q
    |||    
T  3616087 ctc 3616085  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 52077704 - 52077624
Alignment:
Q  140 tctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 228  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||    
T  52077704 tctccaggaatcttcatatcttcttctcccaaattcat--------cacacaccaccatcataaattcatccctacaccaccatcactg 52077624  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 3616436 - 3616352
Alignment:
Q  136 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 228  Q
    ||||||||||||||||||||||||||||||||||||||        |||||| ||||| ||||||||||||||||| ||||||| ||||||||    
T  3616436 ttcatctccaggaatcttcatatcttcttctcccaaat--------tcatcagacaccgccatcataaattcatccatacaccaccatcactg 3616352  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 12666996 - 12666941
Alignment:
Q  170 aaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcac 226  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  12666996 aaattcataaat-catcacacaccaccatcataaattcatcactacaccaccatcac 12666941  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52077875 - 52077842
Alignment:
Q  1 catcaccattgatttctattaataataaacccag 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52077875 catcaccattgatttctattaataataaacccag 52077842  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3616598 - 3616566
Alignment:
Q  2 atcaccattgatttctattaataataaacccag 34  Q
    |||||||||||||||||||||||||||||||||    
T  3616598 atcaccattgatttctattaataataaacccag 3616566  T

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Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 295 - 496
Target Start/End: Original strand, 16756567 - 16756768
Alignment:
Q  295 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 394  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  16756567 tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc 16756666  T
Q  395 ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttccttc 494  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  16756667 ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgttgtttccttcctgcttcttcccttccttc 16756766  T
Q  495 tc 496  Q
    ||    
T  16756767 tc 16756768  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 16756443 - 16756516
Alignment:
Q  136 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16756443 ttcatctccatgaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 16756516  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16756280 - 16756312
Alignment:
Q  1 catcaccattgatttctattaataataaaccca 33  Q
    |||||||||||||||||||||||||||||||||    
T  16756280 catcaccattgatttctattaataataaaccca 16756312  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 496
Target Start/End: Original strand, 7309443 - 7309544
Alignment:
Q  393 ccctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcct 492  Q
    |||||||||||||| | ||||||||||||||  ||||||| |||||||||||||||||| |||  ||| ||  ||||||||||| ||||||||  |||||    
T  7309443 ccctttcacaaaacaagttcatgttttctct--caacaaaaagtatataatttctcttaccaccaactctcaccgtttcctttcagcttcttcttttcct 7309540  T
Q  493 tctc 496  Q
    ||||    
T  7309541 tctc 7309544  T

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