View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_high_20 (Length: 493)
Name: NF3929_high_20
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 40719987 - 40720451
Alignment:
| Q |
19 |
ttttgaccatggaagaatacctcatgtccattctcctatttcttattggttagcatggtatcacatgctatggttctcagccttgtacgtttcttgctgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40719987 |
ttttgaccatggaagaatacctcatgtccattctcctatttcttattggttagcatggtatcacatgctatggttctcagccttgtacgtttcttgctgg |
40720086 |
T |
|
| Q |
119 |
tctagtagatcttacaatttttctggtgattccttcgttgaagaactattggtgaatgagattttggtggtggctatcctatcaaacgttaatgttccat |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720087 |
tctagtagatcttacaatttttatggtgattccttcgttgaagaactattggtgaatgagattttggtggtggctatcctatcaaacgttaatgttccat |
40720186 |
T |
|
| Q |
219 |
ccatcttctcgtttccttggctatccataattaggctgccaaacctgcttatcaccatctttcccttaacagttgttctaagtccatgaccatctctatg |
318 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720187 |
ccatctcctcgtttccttggctatccataattaggctgccaaacctgcttatcaccatcttgcccttaacagttgttctaagtccatgaccatctctatg |
40720286 |
T |
|
| Q |
319 |
attgggaaggggtcaatattaatattggacatttcttaaacttctttatcgcctaacttgaacctatcttccttgatcaacttttaaacagctctttaaa |
418 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40720287 |
actgggaaggggtcaatattaatattggacctttctgaaacttctttatcgcctaacttgaacctgtcttccttgatcaacttttaaacagctctttaaa |
40720386 |
T |
|
| Q |
419 |
agatgatgcaattagtcgtggtgtgattataggaattgtgccagttgacttatctcttgcctttg |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720387 |
agatgatgcaattagtcgtggtgtgattataggaattgtgccagttgacttatctcttgcctttg |
40720451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University