View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_24 (Length: 445)
Name: NF3929_high_24
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 424
Target Start/End: Complemental strand, 38663818 - 38663415
Alignment:
| Q |
20 |
ttaggtgttgttgttgatgatgaggaagaaagaagagggaagatgataaaaagtgaaacaaattaggtgttggtagatcagtgttacatgcaatgaactt |
119 |
Q |
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| T |
38663818 |
ttaggtgctgttgttgatgatgaggaagaaagaagagggaagatgatgaaaagtgaaacaaattaggtgttggtggataactgttacatgcaataaacgt |
38663719 |
T |
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| Q |
120 |
acaatataatgactgaaatcacatctgaaatattagactttggaaaaattaacggattgtatcaatttgactgacaaaacatatttaagggaccgaatgg |
219 |
Q |
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| T |
38663718 |
acaatataataactgaaatcacatctgaaatactagacattagaaaaattaacggactctatcaatttgactgacaaaacatatttaagggaccgaatgg |
38663619 |
T |
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| Q |
220 |
aaannnnnnnnngagttaggggaccaaataaaaaacaacaaattatttatgtaattaagccataatttaaaattgggcccaccatattttattatatatt |
319 |
Q |
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| T |
38663618 |
aaaaaaaaattagagttaggggaacaaataaaaa-caacaaattatttatgtaattaagccataatttaaaattgggcccaccatattttattatatatt |
38663520 |
T |
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| Q |
320 |
caagcagtgtgggtaacaagaactgtgacataaccgaaccgtccccagtctctcgcgaccaaccacaaactcccgactctaccaccactctagccaccca |
419 |
Q |
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| T |
38663519 |
caagcagtgtgggtaacaagaactgtgacataaccgaaccgtccccagtctctcgcgaccaaccacaaactcccgactctaccaccactctagccaccca |
38663420 |
T |
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| Q |
420 |
actct |
424 |
Q |
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| T |
38663419 |
actct |
38663415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 45395887 - 45395935
Alignment:
| Q |
39 |
atgaggaagaaagaagagggaagatgataaaaagtgaaacaaattaggtg |
88 |
Q |
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| T |
45395887 |
atgaggaagaa-gaagagggaagatgatgaaaagtgaaaaaaattaggtg |
45395935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 29861663 - 29861572
Alignment:
| Q |
121 |
caatataatgactgaaatcacatctgaaatattagactttggaaaaattaacggattgtatcaatttgactgacaaaacatatttaagggacc |
213 |
Q |
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|||| ||||| |||||||| ||||| ||||||||||| | ||||| ||||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
29861663 |
caatctaatggctgaaatcgcatctaaaatattagacataa-aaaaactaacggaatggatcaatttgactgacggaacatatttaagggacc |
29861572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 35563182 - 35563104
Alignment:
| Q |
79 |
aaattaggtgttggtagatcagtgttacatgcaatgaacttacaatataatgactgaaatcacatctgaaatattagac |
157 |
Q |
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||||||| | ||||||||||| ||||||| | ||| || | |||| ||||| |||||||||||||| ||||||||||| |
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| T |
35563182 |
aaattagatattggtagatcaccgttacatacgatggacctgcaatctaatggctgaaatcacatctaaaatattagac |
35563104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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