View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_29 (Length: 434)
Name: NF3929_high_29
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Original strand, 37191179 - 37191591
Alignment:
| Q |
12 |
acagactttgccatagaaatagaaaagaatata-----ggatgattattattttttgacggaactatcaaggataagtataattgttatttcacttaact |
106 |
Q |
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| T |
37191179 |
acagactttgccatagaaatagaaaagaatattatctgggatgattattattttttgacggaactatcaaggataagtataattgttatttcacttaact |
37191278 |
T |
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| Q |
107 |
aattatattaattaattcaggcttgcttatagtataaaccaattgtcccactgatacattaggcatatagtacattacctatatattcctttgcattttg |
206 |
Q |
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| T |
37191279 |
aattatattaattaattcaggcttgcttatagtataaaccaattgtcccactgatacattaggcatatagtacattacctatatattcttttgcattttg |
37191378 |
T |
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| Q |
207 |
tagtcacattcatatatgctgaaccggtccaggataaataaaggtactacctatttcaaagattagcatacgaagataggaacttttttctttcattgat |
306 |
Q |
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| T |
37191379 |
tagtcacactcatatatgctgaaccggtccaggataaataaaggtactacctatttcaaagattagcatacgaagataggaacttttttctttcattgat |
37191478 |
T |
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| Q |
307 |
actttgctttatcattattaatggtaataaaagatatctggttgagatatattgatattttccttatcaagtacaaaggaatatttccatttaaatacct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37191479 |
actttgctttatcattattaatggtaataaaagatatctggttgagatatattgatattttccttatcaagtacaaaggaatatttccatttaaatacct |
37191578 |
T |
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| Q |
407 |
aaatggtttattt |
419 |
Q |
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| T |
37191579 |
aaatggtttattt |
37191591 |
T |
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