View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_31 (Length: 430)
Name: NF3929_high_31
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 55480044 - 55480172
Alignment:
| Q |
204 |
gagggtaatttagagtcccccattaactaatactttcattgataataacaataaattgacnnnnnnncctttctattttgacatttttctaattgtgagt |
303 |
Q |
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| T |
55480044 |
gagggtaatttagagtcccccgttaactaatactttcattgataataacaataaattgactttttttcctttctattttgacatttttctaattgtgagt |
55480143 |
T |
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| Q |
304 |
gtgcccgaaatatagagggtgttaacatc |
332 |
Q |
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| T |
55480144 |
gtgcccgaaatatagagggtgttaacatc |
55480172 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 55479894 - 55479976
Alignment:
| Q |
43 |
gaaaagggttttgattgaattaattaaaggaaaaatacaaaactaactttgcatttgaaaacaacttgaactaatggaaattg |
125 |
Q |
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| T |
55479894 |
gaaaagggttttgtttgaattaattaaaggaaaaatacaaaactaactttgcatttgaaaacaccttgaactaatggaaattg |
55479976 |
T |
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