View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_36 (Length: 401)
Name: NF3929_high_36
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 34525414 - 34525026
Alignment:
| Q |
1 |
tccaattgacatcatgataccttttgttatacaagtagtgctaatttatgatatgcttactatgcagttttctagagataaaaggagcattcttgctgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525414 |
tccaattgacatcatgataccttttgttatacaagtagtgctaatttatgatatgcttactatgcagttttctagagataaaaggagcattcttgctgtt |
34525315 |
T |
|
| Q |
101 |
ggcgatatttcagaaattatccccgacaaagatgcagatattgctgttctagaagagcctgagcacctgacgtggtttcatcatggtaaaagatggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34525314 |
ggcgatatttcagaaattatccccgacaaagatgcagatattgctgttctagaagagcctgagcacctgacgtggtttcatcatgggaaaagatggaaaa |
34525215 |
T |
|
| Q |
201 |
ctaaattcaagctagttataggaattattcacaccaattatttagcatatgtgaagagagagaagaatggaaccctgcaagcatttttactgaaatattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525214 |
ctaaattcaagctagttataggaattattcacaccaattatttagcatatgtgaagagagagaagaatggaaccctgcaagcatttttactgaaatattt |
34525115 |
T |
|
| Q |
301 |
aaacaactgggttgttggtatatattgtcacaaggtaaannnnnnnnnnnnnnnncacaaacaatatttatgtatccagtgtttacctt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34525114 |
aaacaactgggttgttggtatatattgtcacaaggtaaatttttctttttcttttcacaaacaatatttatgtatccagtgtttacctt |
34525026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 18004359 - 18003971
Alignment:
| Q |
1 |
tccaattgacatcatgataccttttgttatacaagtagtgctaatttatgatatgcttactatgcagttttctagagataaaaggagcattcttgctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004359 |
tccaattgacatcatgataccttttgttttacaagtagtgctaatttatgatatgcttactatgcagttttctagagataaaaggagcattcttgctgtt |
18004260 |
T |
|
| Q |
101 |
ggcgatatttcagaaattatccccgacaaagatgcagatattgctgttctagaagagcctgagcacctgacgtggtttcatcatggtaaaagatggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18004259 |
ggcgatatttcagaaattatccccgacaaagatgtagatattgctgttctagaagagcctgagcacctgacgtggtttcatcatgggaaaagatggaaaa |
18004160 |
T |
|
| Q |
201 |
ctaaattcaagctagttataggaattattcacaccaattatttagcatatgtgaagagagagaagaatggaaccctgcaagcatttttactgaaatattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004159 |
ctaaattcaagctagttataggaattattcacaccaattatttagcatatgtgaagagagagaagaatggaaccctgcaagcatttttactgaaatattt |
18004060 |
T |
|
| Q |
301 |
aaacaactgggttgttggtatatattgtcacaaggtaaannnnnnnnnnnnnnnncacaaacaatatttatgtatccagtgtttacctt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18004059 |
aaacaactgggttgttggtatatattgtcacaaggtaaatttttctttttcttttcacaaacaatatttatgtatccagtgtttacctt |
18003971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 28764964 - 28765300
Alignment:
| Q |
1 |
tccaattgacatcatgataccttttgttatacaagtagtgctaatttatgatatgcttactatgcagttttctagagataaaaggagcattcttgctgtt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28764964 |
tccacttgacatcatgataccttttggaatacaagtagtgctaatt-atgatatgcttacaatgcagttttctagagataaaaggagcattcttgctgtg |
28765062 |
T |
|
| Q |
101 |
ggcgatatttcagaaattatccccgacaaagatgcagatattgctgttctagaagagcctgagcacctgacgtggtttcatcatggtaaaagatggaaaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28765063 |
ggcgatatttcagaaattatccccgacaatgatgcagatattgctgttctagaagagcctgagcacctgacgtggtttcatcatgggaaaagatggaaaa |
28765162 |
T |
|
| Q |
201 |
ctaaattcaagctagttataggaattattcacaccaattatttagcatatgtgaagagagagaagaatggaaccctgcaagcatttttactgaaatattt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28765163 |
ctaaattcaagctagttataggaattattcacaccaattatctagcatatgtgaagagagagaagaatggaaacctgcaagcatttttactgaaatattt |
28765262 |
T |
|
| Q |
301 |
aaacaactgggttgttggtatatattgtcacaaggtaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28765263 |
aaacaactgggttgttggtatatattgtcacaaggtaa |
28765300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 28765314 - 28765347
Alignment:
| Q |
356 |
cacaaacaatatttatgtatccagtgtttacctt |
389 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
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|
| T |
28765314 |
cacaatcaatatttatgtatccagtgtttacctt |
28765347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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