View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_high_4 (Length: 849)

Name: NF3929_high_4
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_high_4
NF3929_high_4
[»] chr4 (5 HSPs)
chr4 (70-238)||(13390139-13390307)
chr4 (110-232)||(13398066-13398188)
chr4 (237-312)||(47960481-47960558)
chr4 (48-94)||(13394268-13394314)
chr4 (48-94)||(13397407-13397453)
[»] chr2 (5 HSPs)
chr2 (229-489)||(28293450-28293714)
chr2 (640-805)||(28294199-28294364)
chr2 (237-382)||(7826047-7826194)
chr2 (237-313)||(43780628-43780706)
chr2 (237-272)||(22142348-22142383)
[»] chr6 (5 HSPs)
chr6 (238-489)||(29282644-29282899)
chr6 (237-401)||(34007563-34007729)
chr6 (272-339)||(24430636-24430703)
chr6 (365-479)||(24430636-24430744)
chr6 (722-804)||(29282341-29282423)
[»] chr7 (2 HSPs)
chr7 (238-348)||(45832874-45832987)
chr7 (412-457)||(45832858-45832903)
[»] chr1 (2 HSPs)
chr1 (237-312)||(44617957-44618031)
chr1 (262-312)||(44790592-44790642)
[»] chr3 (3 HSPs)
chr3 (237-272)||(38507978-38508013)
chr3 (279-346)||(46832322-46832389)
chr3 (237-275)||(46832153-46832191)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 5e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 13390139 - 13390307
Alignment:
Q  70 acatgcatcatctaacttggtcaaagtcatcgaattcaactattagtttcaaagttccaatgagtaggccaccataacccgtgacctcacattcaggcct 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  13390139 acatgcatcatctaacttggtcaaagtcatcgaattcaactattagtttcaaagttccaatgagtaggccaccataaccagtgacctcacattcaggcca 13390238  T
Q  170 cacattagtacattacacaatcctaattcaatcaatatgtctttctcatttcattaaactttcaatcaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13390239 cacattagtacattacacaatcctaattcaatcaatatgtctttctcattccattaaactttcaatcaa 13390307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 13398066 - 13398188
Alignment:
Q  110 tattagtttcaaagttccaatgagtaggccaccataacccgtgacctcacattcaggcctcacattagtacattacacaatcctaattcaatcaatatgt 209  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13398066 tattcgtttcaaagttccaatgagtaggccaccataaccggtgacctcagattcaggcctcacattagtacattacacaatccttattcaatcaatatgt 13398165  T
Q  210 ctttctcatttcattaaactttc 232  Q
    |||||||||| ||||||||||||    
T  13398166 ctttctcattccattaaactttc 13398188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 47960481 - 47960558
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtca--tataatatgtaataaaagaaagcagaatataacatataata 312  Q
    ||||||||||||||||||| |||||||||||||||  |||| | |||||||||| |||||||||||||||||||||||    
T  47960481 aactagatctcctacccgtactgtcgcacgggtcatttatagtgtgtaataaaataaagcagaatataacatataata 47960558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 13394268 - 13394314
Alignment:
Q  48 aactttgcatccaggacttccaacatgcatcatctaacttggtcaaa 94  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||||    
T  13394268 aactttgcatccatgactcccaacatgcaccatctaacttggtcaaa 13394314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 13397407 - 13397453
Alignment:
Q  48 aactttgcatccaggacttccaacatgcatcatctaacttggtcaaa 94  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||||    
T  13397407 aactttgcatccatgactcccaacatgcaccatctaacttggtcaaa 13397453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 2e-67; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 229 - 489
Target Start/End: Original strand, 28293450 - 28293714
Alignment:
Q  229 tttcaatcaactagatctcctacccgtgctgtcgcacgggtcatata--atatgtaataaaagaaagcagaatataacatataatatctatagatgtcga 326  Q
    |||| ||| ||||||||||| |||||||||| |||||||||||||||  || ||||||||||||||| ||||||||||||||||||| | |||||||||     
T  28293450 tttctatctactagatctcccacccgtgctgccgcacgggtcatatataatgtgtaataaaagaaagtagaatataacatataatatatgtagatgtcgg 28293549  T
Q  327 agaaaggcaagtacaaaataagctccaagactctgatatataatgtctaatgaaataaagtagaatatgacatataagataagtagatgtcacagaaagt 426  Q
    |||||| |||||||||||||||||||||| || |||||||||  ||||||| |||||||| | |||||||| ||||| ||  ||| ||| |  |||||||    
T  28293550 agaaagtcaagtacaaaataagctccaaggctatgatatatagcgtctaataaaataaagcataatatgacctataaaatctgtatatgccggagaaagt 28293649  T
Q  427 caagtataaaataagctcaaaggctctcatattg--tttagatgttcatacattttggaatactt 489  Q
    |||||| ||||||| |||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  28293650 caagtacaaaataatctcaaaggctctcatattgtttttagatgtccatacattttggaatactt 28293714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 640 - 805
Target Start/End: Original strand, 28294199 - 28294364
Alignment:
Q  640 aaaaaacagcaaaaacaggccgtccaaacccgaaaacagcagatcacagcagcctgccagcacagaaacagttgctgacaacagcatacacacgactaac 739  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||  | |||||||| |||||||| |||| || ||    
T  28294199 aaaaaacagcaaaaacaggccgtccaaccccgaaaacagcagatgacagcagccagccagcacagaaattgctgctgacagcagcatactcacggctgac 28294298  T
Q  740 agccgcaccaaaacagccaaacccacccgaaccagccnnnnnnncagacctgcaaccaaacagata 805  Q
    | ||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||    
T  28294299 aaccgcaccaaaacagccaaaaccacccgaaccagccaaaaaaacagacctgcaaccaaacagata 28294364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 7826047 - 7826194
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcat--ataatatgtaataaaagaaagcagaatataacatataatatctatagatgtcgaagaaaggc 334  Q
    ||||||||| || |||||||||||||||||||||||  ||| | |||||||||| |||| ||||||||||||||||||| | ||||| | | | |||| |    
T  7826047 aactagatcccccacccgtgctgtcgcacgggtcatttatagtgtgtaataaaataaagtagaatataacatataatatttgtagatattggataaagtc 7826146  T
Q  335 aagtacaaaataagctccaagactctgatatataatgtctaatgaaat 382  Q
    | |||||||| ||| ||||||||| ||||||||  |||||||| ||||    
T  7826147 aggtacaaaaaaagttccaagactatgatatatggtgtctaataaaat 7826194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 43780706 - 43780628
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcatataa--tatgtaataaaagaaagcagaatataacatataatat 313  Q
    |||||||||||||||||||||| |||||||| |||||||   || |||||||||||||||||||||| |||||||||||    
T  43780706 aactagatctcctacccgtgctatcgcacggatcatatatattaggtaataaaagaaagcagaatatgacatataatat 43780628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 22142348 - 22142383
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcat 272  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22142348 aactagatcgcctacccgtgctgtcgcacgggtcat 22142383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 4e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 238 - 489
Target Start/End: Complemental strand, 29282899 - 29282644
Alignment:
Q  238 actagatctcctacccgtgctgtcgcacgggtcatata--atatgtaataaaagaaagcagaatataacatataatatctatagatgtcgaagaaaggca 335  Q
    ||||||||| | ||||||||||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||    
T  29282899 actagatcttccacccgtgctgcagcacgggtcatatataatgtgtaataaaagaaagcagaatataacatataatatatgtagatgtcggagaaagtca 29282800  T
Q  336 agtacaaaataagctccaagactctgatatataatgtctaatgaaataaagtagaatatgacatataagataagtagatgtcacagaaagtcaagtataa 435  Q
    |||| ||||||||||||||| || |||||||||  ||||||| |||||||| |||||||||| ||||| ||  ||| |||||  ||||||||||||| ||    
T  29282799 agtataaaataagctccaaggctatgatatatagcgtctaataaaataaagcagaatatgacctataaaatctgtacatgtcggagaaagtcaagtacaa 29282700  T
Q  436 aataagctcaaaggctctcatat--tgtttagatgttcatacattttggaatactt 489  Q
    ||| | |||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  29282699 aatgatctcaaaggctctcatattatttttagatgtccatacattttggaatactt 29282644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 237 - 401
Target Start/End: Original strand, 34007563 - 34007729
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcatataa--tatgtaataaaagaaagcagaatataacatataatatctatagatgtcgaagaaaggc 334  Q
    |||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||| |||||||||||||||| || ||||||||||||| |    
T  34007563 aactagatctcctacccgtgctgtcgcacgggtcatatatagtgtgtaataaaagaaagcagaaaataacatataatatctgtaaatgtcgaagaaagtc 34007662  T
Q  335 aagtacaaaataagctccaagactctgatatataatgtctaatgaaataaagtagaatatgacatat 401  Q
    |||||||||||||||| ||||||||||||||||| | |||||| |||||||| ||||||||||||||    
T  34007663 aagtacaaaataagcttcaagactctgatatatagtatctaataaaataaagcagaatatgacatat 34007729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 24430636 - 24430703
Alignment:
Q  272 tataatatgtaataaaagaaagcagaatataacatataatatctatagatgtcgaagaaaggcaagta 339  Q
    |||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||||||    
T  24430636 tataatgtgtaataaaagaaagcagaatataacatataatatatgtagatgtcggagaaagtcaagta 24430703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 479
Target Start/End: Original strand, 24430636 - 24430744
Alignment:
Q  365 tataatgtctaatgaaataaagtagaatatgacatataagataagtagatgtcacagaaagtcaagtataaaataagctcaaaggctctcatattg--tt 462  Q
    |||||||| |||| ||| |||| ||||||| |||||||| ||| |||||||||  ||||||||||||||        |||||||||||||||||||  ||    
T  24430636 tataatgtgtaataaaagaaagcagaatataacatataatatatgtagatgtcggagaaagtcaagtat--------ctcaaaggctctcatattgtttt 24430727  T
Q  463 tagatgttcatacattt 479  Q
    ||||||| |||||||||    
T  24430728 tagatgtccatacattt 24430744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 804
Target Start/End: Complemental strand, 29282423 - 29282341
Alignment:
Q  722 agcatacacacgactaacagccgcaccaaaacagccaaacccacccgaaccagccnnnnnnncagacctgcaaccaaacagat 804  Q
    ||||||| |||| |||| | || |||||||||||||||| |||||| ||||||||       |||||||||||||||||||||    
T  29282423 agcatactcacggctaataaccacaccaaaacagccaaaaccacccaaaccagccaaaaaaacagacctgcaaccaaacagat 29282341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 238 - 348
Target Start/End: Complemental strand, 45832987 - 45832874
Alignment:
Q  238 actagatctcctacccgtgctgtcgcacgggtca--tataatatgtaataaaagaaagcagaatat-aacatataatatctatagatgtcgaagaaaggc 334  Q
    |||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||| ||||| |||||||||||| |   |||||| ||||||| |    
T  45832987 actagatccccaacccgtgctgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcaaagaaagtc 45832888  T
Q  335 aagtacaaaataag 348  Q
    ||||||||||||||    
T  45832887 aagtacaaaataag 45832874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 45832903 - 45832858
Alignment:
Q  412 gatgtcacagaaagtcaagtataaaataagctcaaaggctctcata 457  Q
    ||||||| ||||||||||||| |||||||| ||||||||| |||||    
T  45832903 gatgtcaaagaaagtcaagtacaaaataagttcaaaggctgtcata 45832858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 44617957 - 44618031
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcatataatatgtaataaaagaaagcagaatataacatataata 312  Q
    ||||||||| || |||||||||   ||||||||||||||   ||||||||||||||| ||||||||||||||||||    
T  44617957 aactagatcccc-acccgtgctactgcacgggtcatatatagtgtaataaaagaaagaagaatataacatataata 44618031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 44790642 - 44790592
Alignment:
Q  262 gcacgggtcatataatatgtaataaaagaaagcagaatataacatataata 312  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||||||    
T  44790642 gcacgggtcatatatagtgtaataaaagaaagaagaatataacatataata 44790592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 38507978 - 38508013
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcat 272  Q
    ||||||||| ||||||||||||||||||||||||||    
T  38507978 aactagatcgcctacccgtgctgtcgcacgggtcat 38508013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 46832322 - 46832389
Alignment:
Q  279 tgtaataaaagaaagcagaatataacatataatatctatagatgtcgaagaaaggcaagtacaaaata 346  Q
    ||||||| |||||||||||| || ||||| ||||| | ||||||| | |||||| |||||||||||||    
T  46832322 tgtaatataagaaagcagaagatgacataaaatatttgtagatgtaggagaaagtcaagtacaaaata 46832389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 46832153 - 46832191
Alignment:
Q  237 aactagatctcctacccgtgctgtcgcacgggtcatata 275  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  46832153 aactagatctcctacccatgctgtcgcacgtgtcatata 46832191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University