View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_high_40 (Length: 379)
Name: NF3929_high_40
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 7716263 - 7716616
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaag |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7716263 |
caaactcctcgcaattatcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttataattgagtatgaaacctatctgaag |
7716362 |
T |
|
| Q |
118 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7716363 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaact |
7716462 |
T |
|
| Q |
218 |
agattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7716463 |
agattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaa |
7716562 |
T |
|
| Q |
318 |
gattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatg |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7716563 |
gattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatg |
7716616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 7496713 - 7496360
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
7496713 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagacaccacagagagatttaaaattgagtatgaaacctatatcaag |
7496614 |
T |
|
| Q |
118 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7496613 |
atactctactttggaatgattgactgcttgctgtaatatcttctctgtgacatttgaaagcattactttcctgacatgtttgtgttgtggaattgaaact |
7496514 |
T |
|
| Q |
218 |
agattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaa |
317 |
Q |
| |
|
|||||| ||||| || ||| |||| ||||||| || | ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7496513 |
agattaggacaatatttaatcgataatctttcaagactctgaaactgatgacgacaaccccttgagatttcttcttcgctacaattacaccatcctttaa |
7496414 |
T |
|
| Q |
318 |
gattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatg |
371 |
Q |
| |
|
|||||||||||| | ||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
7496413 |
gattatttaactgaaagagagctatatctgtgagtgacgcacaaaatgatgatg |
7496360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 37 - 371
Target Start/End: Complemental strand, 7530420 - 7530086
Alignment:
| Q |
37 |
gatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaagatactctactttggaatga |
136 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7530420 |
gatatacaattcatacagtgtacttagatgttgaaagactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatga |
7530321 |
T |
|
| Q |
137 |
ttgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaactagattataacaatcttgaa |
236 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||| | | ||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
7530320 |
ttgactgcttgctgtaatatcgtctctctgacctctctaagaattacttccctgatatgtttgtgttgtggaattgaaactagattacaacaaccagaaa |
7530221 |
T |
|
| Q |
237 |
tacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaactcggaaag |
336 |
Q |
| |
|
| |||| ||| ||| || | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |
|
|
| T |
7530220 |
ttgataatcttttaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagatttgttaacagaatgag |
7530121 |
T |
|
| Q |
337 |
aaatatatctgtaagtgacgtacaaaatgatgatg |
371 |
Q |
| |
|
|| ||||||||| ||||||| |||| ||||||||| |
|
|
| T |
7530120 |
aactatatctgtgagtgacgcacaagatgatgatg |
7530086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 7720093 - 7720446
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaag |
117 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | ||||||| |||||||||||||||||||| |||||||| |||||||||||| | |||||| ||| |
|
|
| T |
7720093 |
caaactcctcgcaattgaggatacgcaattcacagagtgtacctagatgttgaaagactccactaagagatttcaaattgagtatggattctatctcaag |
7720192 |
T |
|
| Q |
118 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaact |
217 |
Q |
| |
|
| |||||| ||||||||||||||||||| || |||| ||| ||||| |||| | | ||| ||||||| ||||| || | |||||||||||||||||||| |
|
|
| T |
7720193 |
agactctagtttggaatgattgactgctggcggtaacatcgtctctctgacctctctaagaattacttccctgatatatgtgtgttgtggaattgaaact |
7720292 |
T |
|
| Q |
218 |
agattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaa |
317 |
Q |
| |
|
|||||| ||||| | |||||||||| ||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7720293 |
agattacaacaaacagaaatacataagctttcaagactgttaaactgatgacaacaaccccttgagatttcttcttcgctacagttacaccatcctttta |
7720392 |
T |
|
| Q |
318 |
gattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatg |
371 |
Q |
| |
|
|||| ||||| | |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
7720393 |
gatttgttaacccaaaaagaaatatatctttaagtgacgcacaaaatgatgatg |
7720446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 7126827 - 7127124
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaag |
117 |
Q |
| |
|
||||||||| |||||| | ||||| |||| || ||||| |||||||||||||||||| ||||| ||||||||| ||||| |||||| | ||||| ||| |
|
|
| T |
7126827 |
caaactccttgcaattgtggatacgcaatgcacacagtctacttagatgttgaaagagtccactgagagatttcaaattcagtatgtcatttatcttaag |
7126926 |
T |
|
| Q |
118 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaact |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7126927 |
atactctacttttgaatgattgactgcttgttgtaatatcttctctgtgacatttgaaagaattacattcctgacatgtttgtgttgtggaattgaaact |
7127026 |
T |
|
| Q |
218 |
agattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatccttt |
315 |
Q |
| |
|
|| ||| ||||| || ||| |||| ||||||| || | ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
7127027 |
aggttaggacaatattcaatcgataatctttcaagactctgaaactgatgacaacaaccccttgagatctcttcttcgctacacttacaccatccttt |
7127124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 7522371 - 7522018
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaag |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||| || |
|
|
| T |
7522371 |
caaactcctcgcaattgacgatacacaattcagacagtgtacttagatgttgaaagactccactgagagatttcaaattgagtatggattctatctgtag |
7522272 |
T |
|
| Q |
118 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcat-tactttcctgacatgtttgtgttgtggaattgaaac |
216 |
Q |
| |
|
|| ||||| |||||||||||||||| || |||||||||| | | || | | ||| || ||||| ||||| || | ||||||||||||||||||| |
|
|
| T |
7522271 |
atcctctagtttggaatgattgactacttgctgtaatatatctgaagatac-tctacaaagatctacttccctgatatatgtgtgttgtggaattgaaac |
7522173 |
T |
|
| Q |
217 |
tagattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatccttta |
316 |
Q |
| |
|
||| ||||||||||| | ||| |||| ||||||| || | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7522172 |
tagcttataacaatcattaatcattaaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatccttta |
7522073 |
T |
|
| Q |
317 |
agattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatg |
371 |
Q |
| |
|
|||||| |||||| | |||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
7522072 |
agattagttaactgaaagagaactatatatgtgagtgacgcacaaaatgatgatg |
7522018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 37 - 369
Target Start/End: Complemental strand, 7502884 - 7502552
Alignment:
| Q |
37 |
gatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaagatactctactttggaatga |
136 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
7502884 |
gatacgcaattcacacagtgtacttagatgttgaaagactccactaagagatttcaaattgagcatgaaaaacatctgaagatactctactttggaataa |
7502785 |
T |
|
| Q |
137 |
ttgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaactagattataacaatcttgaa |
236 |
Q |
| |
|
|||||| || ||| |||||||||||||||||| ||| ||| |||||||| ||| || | ||||||| |||||||||||||| ||||||||||| | || |
|
|
| T |
7502784 |
ttgactacttgctttaatatcttctctgtgacctttctaagagttactttcttgatatatgtgtgttgaggaattgaaactagcttataacaatcatcaa |
7502685 |
T |
|
| Q |
237 |
tacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaactcggaaag |
336 |
Q |
| |
|
| |||||| ||||| || | | ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||| | |
|
|
| T |
7502684 |
tcgataagtattcaatactctgagactgatgactacaaccccttgagatttcttctttgctacagttacaccatccttttagatttcttaactgagaagg |
7502585 |
T |
|
| Q |
337 |
aaatatatctgtaagtgacgtacaaaatgatga |
369 |
Q |
| |
|
| |||||| ||| ||| ||| |||||||||||| |
|
|
| T |
7502584 |
atatatatatgtgagtaacgcacaaaatgatga |
7502552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 7484314 - 7483961
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacctatctgaag |
117 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | ||||||| |||||||||||||||||||| |||||||| |||||||||||| | |||| | ||| |
|
|
| T |
7484314 |
caaactcctcgcaattgaggatacgcaattcacagagtgtacctagatgttgaaagactccactaagagatttcaaattgagtatggattctatattaag |
7484215 |
T |
|
| Q |
118 |
atactctactttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcat-tactttcctgacatgtttgtgttgtggaattgaaac |
216 |
Q |
| |
|
| ||||||||||||||||||||||| | |||||||||| | | || | | ||| || ||||| ||||| || | ||||||||||||||||||| |
|
|
| T |
7484214 |
agactctactttggaatgattgactagttgctgtaatatatctgaagatac-tctacaaagatctacttccctgatatatgtgtgttgtggaattgaaac |
7484116 |
T |
|
| Q |
217 |
tagattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatccttta |
316 |
Q |
| |
|
||| ||||||||||| | ||| ||||| ||||||| || | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7484115 |
tagcttataacaatcattaatcaataaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatccttta |
7484016 |
T |
|
| Q |
317 |
agattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatg |
371 |
Q |
| |
|
||||||||||||| | |||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
7484015 |
agattatttaactgaaagagaactatatatgtgagtgacgcacaaaatgatgatg |
7483961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 10477879 - 10477969
Alignment:
| Q |
18 |
caaactcctcgcaattttcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacc |
108 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10477879 |
caaactcctcacaattttagatacacagttcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatgaaacc |
10477969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 7723367 - 7723459
Alignment:
| Q |
208 |
aattgaaactagattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctaca |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||||||||| || | |||||||| |||||| ||| |||| |||||||||| |||||| |
|
|
| T |
7723367 |
aattgaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctaca |
7723459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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