View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_42 (Length: 375)
Name: NF3929_high_42
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 32809244 - 32809134
Alignment:
| Q |
247 |
atatatgccacaatgtgagagactcacatggtcaagttattttgcttcaacnnnnnnnctcaagtatggaggatcctcacgacaaggagaacacaacacc |
346 |
Q |
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| T |
32809244 |
atatataccacaatgtgagagactcacatggtcaagttattttgcttcaac-ctttttctcaagtatggaggagcctcacgacaaggagaccacaacacc |
32809146 |
T |
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| Q |
347 |
gttggaggcaag |
358 |
Q |
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| T |
32809145 |
gttggaggcaag |
32809134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 32269385 - 32269293
Alignment:
| Q |
25 |
ttcacttatttattccacttctttcatctcaaacttgtaaccttccactaacttccggttttctttcactcattcccttactcacaaacaaaa |
117 |
Q |
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| T |
32269385 |
ttcacttatatattccacttctttcatctcaaacttgtaaccttgcactcacttccaattttctttcactcattcccttactcacaaacaaaa |
32269293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32809473 - 32809354
Alignment:
| Q |
1 |
ttatttaaacacaaccccatccacttcacttatttattccacttctttcatctcaaacttgtaaccttccact------aacttccggttttctttcact |
94 |
Q |
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| T |
32809473 |
ttatttaaacacaaccc-acccacttcacttatttattccacttcttacatctcaaact--taacctctcactcacttccacttccagttttctttcact |
32809377 |
T |
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| Q |
95 |
cattcccttactcacaaacaaaa |
117 |
Q |
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| T |
32809376 |
cattcccttactcacaaacaaaa |
32809354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 32269144 - 32269089
Alignment:
| Q |
305 |
ctcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaagtg |
360 |
Q |
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| T |
32269144 |
ctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaagtg |
32269089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 32275452 - 32275400
Alignment:
| Q |
306 |
tcaagtatggaggatcctcacgacaaggagaacacaacaccgttggaggcaag |
358 |
Q |
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| T |
32275452 |
tcaagtatggaggagcctcacgacaaggagaacccaacaccgttggaggcaag |
32275400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 32809277 - 32809241
Alignment:
| Q |
201 |
atcatttatctgcctctcaccaatcttacaaatatat |
237 |
Q |
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| T |
32809277 |
atcatttatctccctctcaccaatcttacaaatatat |
32809241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 32269212 - 32269167
Alignment:
| Q |
201 |
atcatttatctgcctctcaccaatcttacaaatatattcccatgtg |
246 |
Q |
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| T |
32269212 |
atcatttatctccctctcaccagtcttacaaatttatacccatgtg |
32269167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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