View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_46 (Length: 367)
Name: NF3929_high_46
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 43618844 - 43619191
Alignment:
| Q |
1 |
agaatgttaaaaactgcacacaaacataaaatacacaatgtaattttcagttgcaaatttcttaaaagggaaaaagtacgcaaaaattatccactagatg |
100 |
Q |
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| T |
43618844 |
agaatgttaaaaactgcacacaaacataaaatacacaatgtaattttcagttgcaaatttcttaaaagggaaa--gtacgcaaaaattatccactagatg |
43618941 |
T |
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| Q |
101 |
gcttcctaaacaaggaacataacaaaatatcatgtatttagcaaaagaataactttatttcattcatgtattcaaccatcaaaattattataactttatt |
200 |
Q |
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| T |
43618942 |
gcttcctaaacaaggaacataacaaaatatcatgtatttatcaaaagaataactttatttcattcatgtattcaacgatcaaaattattataactttatt |
43619041 |
T |
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| Q |
201 |
tttgttccactgaaattcacacacaactgcaaggtttcgggtatgttcctgagagaacgagcaaaaggtaccttttaatgacgtaaaaacttggcgcatc |
300 |
Q |
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| T |
43619042 |
tttgttccactgaaattcacacacaactgcaaggtttcgggtatgttgctgagagaacgagcaaaaggtacctttcgataacacaaacacttggcgcatc |
43619141 |
T |
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| Q |
301 |
tttcttaatgaacaaggaatactctctgactttacctgcgaactccttac |
350 |
Q |
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| T |
43619142 |
ttccttaaggtacaaggaatactctctgactttatccgcaaactccttac |
43619191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 43650142 - 43650211
Alignment:
| Q |
264 |
aaaggtaccttttaatgacgtaaaaacttggcgcatctttcttaatgaacaaggaatactctctgacttt |
333 |
Q |
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| T |
43650142 |
aaaggtacctctcaataacacaaacacttggcgcatcttccttaatgaacaacaaataatctctgacttt |
43650211 |
T |
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