View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_49 (Length: 360)
Name: NF3929_high_49
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_49 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 34113263 - 34112913
Alignment:
| Q |
11 |
cacagagaacacctataaaacaaaaacgtacaaaaacattatactaccagtctcaaacaaagttgaaacttacaatcatcaataaaaattgnnnnnnnat |
110 |
Q |
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| T |
34113263 |
cacagagaacacctataaaacaaaaaagtacaaaaacattatactaccagtctcaaacaaagttgaaacttacaatcatcaataaaaattgtttttttat |
34113164 |
T |
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| Q |
111 |
tagaattacacaccacaagcttcaaagtttcactcaattttcacattatgggcttatttgaacttatctaatggcatacattttgtgacactgtagatag |
210 |
Q |
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| T |
34113163 |
tagaattacacaccacaagcttcaaagtttcactcaattttcacattatgggcttatttgaacttatctaatggcatacattttgtgacactgtagatag |
34113064 |
T |
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| Q |
211 |
aacttttgaaaacagattataacattgttcataagcaatatgggcctgtttggactaacttatttgagctaagaacttataa-aaaacagcttataacaa |
309 |
Q |
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| T |
34113063 |
aacttttgaaaacagattataacattgttcataagcaatatgggcctgtttggactaacttatttgagctaagaacttataaaaaaacagcttataacaa |
34112964 |
T |
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| Q |
310 |
tgcttataagcagttttcagcttattttcaaatatttctcaaatagtctat |
360 |
Q |
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| T |
34112963 |
tgcttataagcagttttcagcttattttcaaatatttctcaaatagtctat |
34112913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 42100455 - 42100371
Alignment:
| Q |
158 |
atgggcttatttgaacttatctaatggcatacattttgtgacactgt-agatagaacttttgaaaacagattataacattgttca |
241 |
Q |
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| T |
42100455 |
atgggcttatttgagcttatctattggcataaattttgtgtgactgtgtgagagaacttgtgaaaatagcttatgacatagttca |
42100371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 7928227 - 7928313
Alignment:
| Q |
161 |
ggcttatttgaacttatctaatggcatacattttgtgacactgt-agatagaacttttgaaaacagattat-aacattgttcataag |
245 |
Q |
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| T |
7928227 |
ggcttatttgagcttatctattgacataagttgtgtgagactgttagaaagaacttttgaaaacagcttatggacattgttcataag |
7928313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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