View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_50 (Length: 359)
Name: NF3929_high_50
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 506578 - 506243
Alignment:
| Q |
10 |
gcaaaggccaataaaaacaacaatacaaaaacatcagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaagggggc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
506578 |
gcaaaggccaataaaaacaacaatacaaaaacatcagggtgccgtatataggcgaaacaccccaatcaaataaaccaccaaaaaccagaaaaaagggggc |
506479 |
T |
|
| Q |
110 |
gcacatattaataagtgaaattgaacattctgnnnnnnnnnatgcaacatcctgcttgttagttgcaataccatagacaaatatgataaaccaattatcc |
209 |
Q |
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|||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
506478 |
gcacatattaataattgaaattgaacattctatttttgtttatgcgacatcctgcttgttagttgcaataccatagacaaatgtggtaaaccaattatcc |
506379 |
T |
|
| Q |
210 |
taactaagttttatgtttgcatttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaa |
309 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506378 |
taactaacttttatgtttgcatttgcagttcaataattgaacaatttgctaccacagtttccaaccttgcacaaatattagctaatatcctagcagagaa |
506279 |
T |
|
| Q |
310 |
attgggtcaccaatcatctttctttaaggagaattg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
506278 |
attgggtcaccaatcatctttctttaaggagaattg |
506243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 3595171 - 3595067
Alignment:
| Q |
10 |
gcaaaggccaataaaaacaacaatacaaaaacat-cagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaaggggg |
108 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| ||||||||| | || ||||| ||||||||| | || ||||||||||||||||||||||| |||| |
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| T |
3595171 |
gcaaaggccagcaaaaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaa-ctataaaaccaccaaaaaccagaaaaaatgggg |
3595073 |
T |
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| Q |
109 |
cgcaca |
114 |
Q |
| |
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||||| |
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|
| T |
3595072 |
ggcaca |
3595067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 16703181 - 16703067
Alignment:
| Q |
231 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
330 |
Q |
| |
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||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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| T |
16703181 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
16703082 |
T |
|
| Q |
331 |
ctttaaggagaattg |
345 |
Q |
| |
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|||||||||||||| |
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| T |
16703081 |
ttttaaggagaattg |
16703067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 17677417 - 17677303
Alignment:
| Q |
231 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
330 |
Q |
| |
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||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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|
| T |
17677417 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
17677318 |
T |
|
| Q |
331 |
ctttaaggagaattg |
345 |
Q |
| |
|
|||||||||||||| |
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|
| T |
17677317 |
ttttaaggagaattg |
17677303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 5179730 - 5179622
Alignment:
| Q |
10 |
gcaaaggccaataaaaacaacaatacaaaaacat-cagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaa-aaagggg |
107 |
Q |
| |
|
|||||||||| |||||||||| ||||||| || |||||||||||||| ||||| |||||||||| | || |||||| ||||||||| ||| || |||| |
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| T |
5179730 |
gcaaaggccagcaaaaacaacagtacaaaatcaaacagggtgccgtatataggcggaacaccccaa-ccataaaaccaacaaaaaccataaacaatgggg |
5179632 |
T |
|
| Q |
108 |
gcgcacatat |
117 |
Q |
| |
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||||| |||| |
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|
| T |
5179631 |
gcgcaaatat |
5179622 |
T |
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