View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_52 (Length: 354)
Name: NF3929_high_52
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 337
Target Start/End: Complemental strand, 30273433 - 30273098
Alignment:
| Q |
2 |
accgaacacctgtggatgctattcaccggatttttgacaacttcggtttcattttttcggatccatctatacagagaggttaacatgtggctgctaattt |
101 |
Q |
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| T |
30273433 |
accgaacacctgtggatgctattcaccggatttttgacaacttcggtttcattttttcagatccatctatacagagaggttaacatgtggctgctaattt |
30273334 |
T |
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| Q |
102 |
tccggattcatctatacactagttctactacaaataagccaatgattgatagaacttttggtcattttatccgggtgttagtggatatggagctcaaaat |
201 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30273333 |
tccggattcatctaaacactagttctactacaaataagccaatgattgatagaacttttggtcattttgttcgggtgttagtggatatggagctcaaaat |
30273234 |
T |
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| Q |
202 |
tgaaccaaaatataaaatccttgtggagagaacaatattttcttttattgctgggatcgaatatggaaacatgcatgatttttacaaccattttaaaaga |
301 |
Q |
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| T |
30273233 |
tgaaccaaaatataaaatccttgtggagagaacaatattttcttttattgctgggattgaatatggaaacatgcatgatttttacaaccattttaaaaga |
30273134 |
T |
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| Q |
302 |
gtcaacgttgcaccaactcaggaggaacacgaactt |
337 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
30273133 |
gtcaaagttgcaccaactcaggaggaacacgaactt |
30273098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 30434668 - 30434538
Alignment:
| Q |
118 |
cactagttctactacaaataagccaatgattgatagaacttttggtcattttatccgggtgttagtggatatggagctcaaaattgaaccaaaatataaa |
217 |
Q |
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||||| |||||| ||||||||| ||| |||||||||||||| ||||||| | |||||||||||||| ||||| ||||||||| || ||||||||||| |
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| T |
30434668 |
cactatttctaccacaaataagttaatacctgatagaacttttgctcattttgttcgggtgttagtggacatggaactcaaaatttaatcaaaatataaa |
30434569 |
T |
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| Q |
218 |
atccttgtggagagaacaatattttctttta |
248 |
Q |
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||| |||| || ||||||||||||||||||| |
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| T |
30434568 |
atctttgttgaaagaacaatattttctttta |
30434538 |
T |
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