View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_55 (Length: 330)
Name: NF3929_high_55
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 50054932 - 50055229
Alignment:
| Q |
15 |
caaaggtgaatggtgacaacgtgtgcaagtgttgtaaagcttgtgatattaatatacatatataagaaaattgaagtaactaaatgtatatttggtatca |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50054932 |
caaaggtgaatggtgacaacgtgtgcaagtgtggtaaagcttgtgatattaatatacatatataagaaaattgaagtaactaaatgtatatttggtatca |
50055031 |
T |
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| Q |
115 |
ccatgagtgtgtaaaaaatcagggtgaacaagatgttgataaattgattgtgataccaatcattaactaaagggattataaatagtaaataagccatgaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50055032 |
ccatgagtgtgtaaaaaatcagggtgaacaagatgttgatatattgattgtgataccaatcattaactaaagggattataaatagtaaataagccatgaa |
50055131 |
T |
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| Q |
215 |
gaaattaagatataaattataccatgcaatcaggccagttctcatcagcatccaaaattggcttgtcaccattagtccagggacacttttggctatcc |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50055132 |
gaaattaagatataaattataccatgcaatcgggccagttctcatcagcatccaaaattggcttgtcaccattagtccagggacacttctggctatcc |
50055229 |
T |
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