View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_high_6 (Length: 779)

Name: NF3929_high_6
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_high_6
NF3929_high_6
[»] chr7 (15 HSPs)
chr7 (249-779)||(46537313-46537866)
chr7 (74-417)||(46538376-46538708)
chr7 (558-692)||(46537875-46538009)
chr7 (252-428)||(46537905-46538092)
chr7 (556-692)||(46538104-46538242)
chr7 (249-372)||(46538202-46538326)
chr7 (595-692)||(46538335-46538432)
chr7 (452-520)||(11650575-11650643)
chr7 (455-520)||(11650379-11650444)
chr7 (455-520)||(11650772-11650837)
chr7 (665-723)||(11650596-11650653)
chr7 (665-723)||(11650793-11650850)
chr7 (6-47)||(46538722-46538763)
chr7 (665-723)||(11650400-11650457)
chr7 (139-183)||(37447670-37447714)
[»] chr8 (11 HSPs)
chr8 (421-779)||(18437737-18438106)
chr8 (214-357)||(18432581-18432725)
chr8 (556-692)||(18432700-18432836)
chr8 (249-372)||(18432845-18432969)
chr8 (600-715)||(18437662-18437777)
chr8 (362-499)||(18437912-18438050)
chr8 (366-423)||(18437662-18437719)
chr8 (455-520)||(39477112-39477177)
chr8 (455-520)||(44074146-44074211)
chr8 (665-723)||(39477133-39477190)
chr8 (665-723)||(44074133-44074190)
[»] chr4 (12 HSPs)
chr4 (563-692)||(50940860-50940989)
chr4 (556-692)||(50940622-50940760)
chr4 (455-520)||(22206499-22206564)
chr4 (263-416)||(50940783-50940947)
chr4 (451-520)||(22732947-22733016)
chr4 (666-723)||(22206520-22206576)
chr4 (458-519)||(23142374-23142435)
chr4 (665-715)||(22732976-22733025)
chr4 (687-723)||(23142379-23142415)
chr4 (665-723)||(22202748-22202805)
chr4 (455-504)||(22202743-22202792)
chr4 (6-47)||(50938978-50939019)
[»] chr5 (3 HSPs)
chr5 (455-520)||(1998120-1998185)
chr5 (139-183)||(14988163-14988207)
chr5 (687-723)||(1998128-1998164)
[»] chr1 (6 HSPs)
chr1 (455-520)||(19040454-19040519)
chr1 (455-520)||(19040748-19040813)
chr1 (668-723)||(19040444-19040498)
chr1 (668-723)||(19040738-19040792)
chr1 (455-499)||(19040571-19040615)
chr1 (455-520)||(23759492-23759560)
[»] scaffold0001 (2 HSPs)
scaffold0001 (666-723)||(406759-406815)
scaffold0001 (451-499)||(406759-406807)
[»] chr6 (7 HSPs)
chr6 (732-777)||(8500002-8500047)
chr6 (455-520)||(30340401-30340466)
chr6 (141-184)||(8499856-8499899)
chr6 (6-47)||(8498383-8498424)
chr6 (449-517)||(8500506-8500574)
chr6 (455-517)||(8500696-8500758)
chr6 (214-263)||(8499970-8500019)
[»] chr3 (3 HSPs)
chr3 (455-520)||(48608711-48608776)
chr3 (455-499)||(33816002-33816046)
chr3 (665-723)||(48608698-48608755)
[»] chr2 (3 HSPs)
chr2 (455-520)||(9792954-9793019)
chr2 (455-520)||(43783221-43783286)
chr2 (665-723)||(9792975-9793032)


Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 249 - 779
Target Start/End: Complemental strand, 46537866 - 46537313
Alignment:
Q  249 cataattactattcaaaatcgacttaaccttgatacgtgttaatttttgaaataagtacgtcataattgcttttaatagctagtaattggtagagtgatt 348  Q
    ||||||||| ||| |||||||| | ||||||||||||| |  ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46537866 cataattaccattaaaaatcgaatcaaccttgatacgttt--atttttgaaataagtacgtcataattgcttttaatagataataattggtagagtgatt 46537769  T
Q  349 agtgcataagacataaaagcaattcatgtacgaaaatatgcaaattaaaagttttcaattgtcattaac--------------------tacgttctcaa 428  Q
    |||||||||  |||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||                    |||||||||||    
T  46537768 agtgcataatgcataaaagcaattcctatacgaaaatatgcaacttaaaagttttcaattgtcattaacaacgttttcaagccattaactacgttctcaa 46537669  T
Q  429 ttgtcattagtagtgtgtcattcgttttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaatctcacatt 528  Q
    ||| |||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  46537668 ttgccattaacattgtgtcattcgttttcaattgcattaaaagtgtgttattcgtttttaattaacattaagtaagttataggagagaaaatctcgcatt 46537569  T
Q  529 tgagaatatattgattttaataggccgtaattggtagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaatatgcacctt 628  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537568 tgagaatatattgattttaataggccttaattggtagaggaattagtgcataatgcataaaatcaattaaaagcaattcctacacgaaaatatgcacctt 46537469  T
Q  629 gaaagtttttaattgccattaactacgttttca--tgccattaa----ctacgttctcaattgccattaaaagtgtgttattcgttttaaattagcatta 722  Q
    ||||||||| ||||||||||||||| ||| |||  |||||||||     | |||| ||||||| |||||||| ||| ||||||||||| ||||| || ||    
T  46537468 gaaagttttcaattgccattaactatgttctcaattgccattaaaaatgttcgttttcaattg-cattaaaaatgtattattcgtttttaattaacacta 46537370  T
Q  723 agtagcattatgcataattactattcgttatataccgttaatgagcaataagtttct 779  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46537369 agtagcattatgcataattactatttgttatataccgttaatgagcaataagtttct 46537313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 74 - 417
Target Start/End: Complemental strand, 46538708 - 46538376
Alignment:
Q  74 tcaaatatgtttcccgacaaagcaattagagaaattctagagtttggcacaatttccattctctgtctatttgtaataattactattcattgcagccata 173  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||    
T  46538708 tcaaatatgttttcagacaaagcaattagagaaattctggagtttggcacaatttccattatgtgtctattggtaataattactattcattgcagtcata 46538609  T
Q  174 aaagcaattagagcaatagtaattgattagcagaatgcttgcatgatgcttgctaatgccctttgacccgtgatgcataattactattcaaaatcgactt 273  Q
    |||||||||||||||||| ||||| ||||||| ||||||||            ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  46538608 aaagcaattagagcaataataatttattagcataatgcttgg-----------taatgccctatgacccgtaatgcataattactattcaaaatcgactt 46538520  T
Q  274 aaccttgatacgtgttaatttttgaaataagtacgtcataattgc-ttttaatagctagtaattggtagagtgattagtgcataagacataaaagcaatt 372  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||| || || |||||| |||| | ||||||||||| |   |||||||||||    
T  46538519 aaccttgatacatgttaatttttgaaataagtacgtcataattgctttttaacaggtaataattgatagaataattagtgcatatg-gttaaaagcaatt 46538421  T
Q  373 catgtacgaaaatatgcaaattaaaagttttcaattgtcattaac 417  Q
    | | ||||||||||||||| ||||||||||| ||||| |||||||    
T  46538420 cctatacgaaaatatgcaacttaaaagttttgaattgccattaac 46538376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 558 - 692
Target Start/End: Complemental strand, 46538009 - 46537875
Alignment:
Q  558 attggtagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaatatgcaccttgaaagtttttaattgccattaactacgtt 657  Q
    |||||||||| ||||| ||||| |||||||||| ||||| ||| ||||||||| ||||||||||||| ||| |||||||| ||||||||||||| |||||    
T  46538009 attggtagagtaattagtgcataatgcataaaagcaatttaaatcaattcctatacgaaaatatgcaacttaaaagttttcaattgccattaacgacgtt 46537910  T
Q  658 ttcatgccattaactacgttctcaattgccattaa 692  Q
    |||| ||||||||||||||||||||||||||||||    
T  46537909 ttcaagccattaactacgttctcaattgccattaa 46537875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 252 - 428
Target Start/End: Complemental strand, 46538092 - 46537905
Alignment:
Q  252 aattactattcaaaatcgacttaaccttgatacgtgttaatttttgaaataagtacgtcataattgct-tttaatagctagtaattggtagagtgattag 350  Q
    |||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || | ||||||||||| |||||    
T  46538092 aattactattaaaaatcgaatcaaccttgatacgtgtttatttttgaaataagtacgtcataattgctctttaacaggtaatgattggtagagtaattag 46537993  T
Q  351 tgcataagacataaaag----------caattcatgtacgaaaatatgcaaattaaaagttttcaattgtcattaactacgttctcaa 428  Q
    |||||||  ||||||||          |||||| | ||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||    
T  46537992 tgcataatgcataaaagcaatttaaatcaattcctatacgaaaatatgcaacttaaaagttttcaattgccattaacgacgttttcaa 46537905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 556 - 692
Target Start/End: Complemental strand, 46538242 - 46538104
Alignment:
Q  556 taattggtagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaatatgcaccttg--aaagtttttaattgccattaacta 653  Q
    |||||||||||| ||||| ||||| |||||||||| ||||| |||||| |||||| ||||||||||||   ||   |||||||| |||||| |||||| |    
T  46538242 taattggtagagtaattagtgcataatgcataaaaacaatttaaagcatttcctatacgaaaatatgccttttataaaagttttcaattgcaattaacga 46538143  T
Q  654 cgttttcatgccattaactacgttctcaattgccattaa 692  Q
    | |||||| ||||||||||||||||||||||||||||||    
T  46538142 cattttcaagccattaactacgttctcaattgccattaa 46538104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 249 - 372
Target Start/End: Complemental strand, 46538326 - 46538202
Alignment:
Q  249 cataattactattcaaaatcgacttaaccttgatacgtgttaatttttgaaataagtacgtcataattgc-ttttaatagctagtaattggtagagtgat 347  Q
    ||||||||||||| |||||| | | |||||||||||||||| |||||| ||||||||||||||||||| | |||||| || || ||||||||||||| ||    
T  46538326 cataattactattaaaaatcaaatcaaccttgatacgtgtttattttttaaataagtacgtcataattactttttaagaggtaataattggtagagtaat 46538227  T
Q  348 tagtgcataagacataaaagcaatt 372  Q
    ||||||||||  ||||||| |||||    
T  46538226 tagtgcataatgcataaaaacaatt 46538202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 595 - 692
Target Start/End: Complemental strand, 46538432 - 46538335
Alignment:
Q  595 ttaaaagcaattcctacacgaaaatatgcaccttgaaagtttttaattgccattaactacgttttcatgccattaactacgttctcaattgccattaa 692  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||| || |||| | || |||| ||||||||||||||||||||||    
T  46538432 ttaaaagcaattcctatacgaaaatatgcaacttaaaagttttgaattgccattaacgacctttttaagctattatctacgttctcaattgccattaa 46538335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 11650643 - 11650575
Alignment:
Q  452 gttttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| ||||||||||    
T  11650643 gttttcaattgcattaaaagtgtgttattcgttttcaattagcattaactaagttatatgagagaaaat 11650575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 11650444 - 11650379
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||| ||||||||| ||||||||||    
T  11650444 ttcaattgcattaaaagtgtgttattcgttttcaattggcattaactaagttatatgagagaaaat 11650379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 11650837 - 11650772
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| ||| ||||| ||||||||||    
T  11650837 ttcaattgcattaaaagtgtgttattcgttttcaattagcattaactaatttatatgagagaaaat 11650772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 11650653 - 11650596
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  11650653 cattaactatgttttcaattgc-attaaaagtgtgttattcgttttcaattagcattaa 11650596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 11650850 - 11650793
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||    
T  11650850 cattaactacgtcttcaattgc-attaaaagtgtgttattcgttttcaattagcattaa 11650793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 46538763 - 46538722
Alignment:
Q  6 tggacatcatcaacagcatcacaatttccattatgtgtcaat 47  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  46538763 tggacatcatcaacaacatcacaatttccattatgtgtcaat 46538722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 11650457 - 11650400
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||    
T  11650457 cattaactacgtcttcaattgc-attaaaagtgtgttattcgttttcaattggcattaa 11650400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 37447670 - 37447714
Alignment:
Q  139 tctatttgtaataattactattcattgcagccataaaagcaatta 183  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||    
T  37447670 tctattggtaataatttctattcattgcaaccataaaagcaatta 37447714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 421 - 779
Target Start/End: Original strand, 18437737 - 18438106
Alignment:
Q  421 gttctcaattgtcattagtagtgtgtcattcgttttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    ||||||||||| |||||  | ||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  18437737 gttctcaattgccattaacaatgtgtcattcgtttttaattgcattaaaagtgcgttattcatttttaattaacattaagtaagttataggagagaaaat 18437836  T
Q  521 ctcacatttgagaatatattgattttaataggccgtaattggtagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaata 620  Q
    ||| |||||||||||| ||||||||||||||| ||||||||| |||||||||| ||||  |||||||||| ||||||||||||||||||| |||||||||    
T  18437837 ctcgcatttgagaatagattgattttaatagggcgtaattggaagaggaattagtgcacaatgcataaaaacaattaaaagcaattcctatacgaaaata 18437936  T
Q  621 tgcaccttgaaagtttttaattgccattaactacgttttca--tgccattaa---------ctacgttctcaattgccattaaaagtgtgttattcgttt 709  Q
    ||||||||||||||||||||||||||||||||| ||| |||  |||||||||          | |||| ||||||  |||||||||||||||||||||||    
T  18437937 tgcaccttgaaagtttttaattgccattaactatgttctcaattgccattaaaattgtctcattcgttttcaattttcattaaaagtgtgttattcgttt 18438036  T
Q  710 taaattagcattaagtagcattatgcataattactattcgttatataccgttaatgagcaataagtttct 779  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  18438037 ttaattagcattaagtagcattatgcataattactattcattatataccgtaaatgagcaataagtttct 18438106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 214 - 357
Target Start/End: Original strand, 18432581 - 18432725
Alignment:
Q  214 gcatgatgcttgctaatgccctttgacccgtgatgcataattactattcaaaatcgacttaaccttgatacgtgttaatttttgaaataagtacgtcata 313  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18432581 gcataatgcttggtaatgccctttgacccgtaatgcataattactatttaaaatcgacttaaccttgatacatgttaatttttgaaataagtacgtcata 18432680  T
Q  314 attgc-ttttaatagctagtaattggtagagtgattagtgcataa 357  Q
    ||||| |||||| || || ||||||||||||| ||||||||||||    
T  18432681 attgctttttaacagataataattggtagagtaattagtgcataa 18432725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 556 - 692
Target Start/End: Original strand, 18432700 - 18432836
Alignment:
Q  556 taattggtagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaatatgcaccttgaaagtttttaattgccattaactacg 655  Q
    |||||||||||| ||||| ||||| |||  ||||| ||||| ||||||||||||| |||||||||||| |||| |||||| | |||| |||||||| | |    
T  18432700 taattggtagagtaattagtgcataatggttaaaagcaatttaaagcaattcctaaacgaaaatatgctccttaaaagttctcaatttccattaacgatg 18432799  T
Q  656 ttttcatgccattaactacgttctcaattgccattaa 692  Q
    |||||| || |||||||||||||||||||||||||||    
T  18432800 ttttcaagctattaactacgttctcaattgccattaa 18432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 249 - 372
Target Start/End: Original strand, 18432845 - 18432969
Alignment:
Q  249 cataattactattcaaaatcgacttaaccttgatacgtgttaatttttgaaataagtacgtcataattgc-ttttaatagctagtaattggtagagtgat 347  Q
    ||||||||||||| |||||||| | ||||||||||| |||| |||||||||||||||||||||||||| | |||||| || || ||||||||||||| ||    
T  18432845 cataattactattaaaaatcgaatcaaccttgatacatgtttatttttgaaataagtacgtcataatttctttttaacaggtaataattggtagagtaat 18432944  T
Q  348 tagtgcataagacataaaagcaatt 372  Q
    ||||||||||  |||||||||||||    
T  18432945 tagtgcataatgcataaaagcaatt 18432969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 600 - 715
Target Start/End: Original strand, 18437662 - 18437777
Alignment:
Q  600 agcaattcctacacgaaaatatgcaccttgaaagtttttaattgccattaactacgttttcatgccattaactacgttctcaattgccattaaaagtgtg 699  Q
    ||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||| |||| || |||||||||||||||||| | ||||    
T  18437662 agcaattcctatacgaaaatatgcaacttaaaagttttcaattgccattaactacgttttcaagcccttaaatatgttctcaattgccattaacaatgtg 18437761  T
Q  700 ttattcgttttaaatt 715  Q
    | ||||||||| ||||    
T  18437762 tcattcgtttttaatt 18437777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 362 - 499
Target Start/End: Original strand, 18437912 - 18438050
Alignment:
Q  362 taaaagcaattcatgtacgaaaatatgcaaattaaaagttttcaattgtcattaactacgttctcaattgtcattagtagtgtgtcattcgttttcaa-t 460  Q
    |||||||||||| | ||||||||||||||  || |||||||| ||||| ||||||||| ||||||||||| |||||  | ||| |||||||||||||| |    
T  18437912 taaaagcaattcctatacgaaaatatgcaccttgaaagtttttaattgccattaactatgttctcaattgccattaaaattgtctcattcgttttcaatt 18438011  T
Q  461 tgcattaaaaatgtgttattcgtttttaattaacattaa 499  Q
    | |||||||| ||||||||||||||||||||| ||||||    
T  18438012 ttcattaaaagtgtgttattcgtttttaattagcattaa 18438050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 18437662 - 18437719
Alignment:
Q  366 agcaattcatgtacgaaaatatgcaaattaaaagttttcaattgtcattaactacgtt 423  Q
    |||||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  18437662 agcaattcctatacgaaaatatgcaacttaaaagttttcaattgccattaactacgtt 18437719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 39477177 - 39477112
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||| ||||||||| ||||||||||    
T  39477177 ttcaattgcattaaaagtgtgttattcgttttcaattggcattaactaagttatatgagagaaaat 39477112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 44074146 - 44074211
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| |||||||||| |||| ||||| |||||| ||||||||| ||||| ||||    
T  44074146 ttcaattgcattaaaagtgtgttattcattttcaattagcattaactaagttatatgagagtaaat 44074211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 39477190 - 39477133
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||    
T  39477190 cattaactacgtcttcaattgc-attaaaagtgtgttattcgttttcaattggcattaa 39477133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 723
Target Start/End: Original strand, 44074133 - 44074190
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||| ||||||||||||    
T  44074133 cattaactacgtcttcaattgc-attaaaagtgtgttattcattttcaattagcattaa 44074190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 9e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 563 - 692
Target Start/End: Original strand, 50940860 - 50940989
Alignment:
Q  563 tagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaatatgcaccttgaaagtttttaattgccattaactacgttttcat 662  Q
    ||||| ||||| ||||| |||||||||| ||||| ||| ||||||||| ||||||||||||| ||| |||||||| ||||||||||||  |||||||||     
T  50940860 tagagtaattagtgcataatgcataaaagcaatttaaaacaattcctatacgaaaatatgcaacttaaaagttttcaattgccattaaagacgttttcaa 50940959  T
Q  663 gccattaactacgttctcaattgccattaa 692  Q
    |||  ||||||| |||||||||||||||||    
T  50940960 gcctataactacattctcaattgccattaa 50940989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 692
Target Start/End: Original strand, 50940622 - 50940760
Alignment:
Q  556 taattggtagaggaattattgcatgatgcataaaatcaattaaaagcaattcctacacgaaaatatgca--ccttgaaagtttttaattgccattaacta 653  Q
    |||||||||||| ||||| ||| | |||||||||| ||||| ||| || ||| || ||||||| ||||   |  | |||||||| ||||||||||||| |    
T  50940622 taattggtagagtaattagtgcttaatgcataaaagcaatttaaaacatttcttatacgaaaacatgccttctataaaagttttcaattgccattaacga 50940721  T
Q  654 cgttttcatgccattaactacgttctcaattgccattaa 692  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  50940722 cgttttcaagccattaactacgttcacaattgccattaa 50940760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 22206564 - 22206499
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| ||||||||||    
T  22206564 ttcaattgcattaaaagtgtgttattcgttttcaattagcattaactaagttatatgagagaaaat 22206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 263 - 416
Target Start/End: Original strand, 50940783 - 50940947
Alignment:
Q  263 aaaatcgacttaaccttgatacgtgttaatttttgaaataagtacgtcataattgct-tttaatagctagtaattggtagagtgattagtgcataagaca 361  Q
    |||||||| | ||| ||||||| |||| ||||||||||||||||||||||||||||| |||||  | || | | || |||||| ||||||||||||  ||    
T  50940783 aaaatcgaatcaactttgatacatgtttatttttgaaataagtacgtcataattgctctttaaccggtaatgactgttagagtaattagtgcataatgca 50940882  T
Q  362 taaaag----------caattcatgtacgaaaatatgcaaattaaaagttttcaattgtcattaa 416  Q
    ||||||          |||||| | ||||||||||||||| ||||||||||||||||| ||||||    
T  50940883 taaaagcaatttaaaacaattcctatacgaaaatatgcaacttaaaagttttcaattgccattaa 50940947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 22733016 - 22732947
Alignment:
Q  451 cgttttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||||||| ||||||||||||||| ||||   ||||| ||||||||| ||||||||||    
T  22733016 cgttttcaattgcattaaaagtgtgttattcgttttcaattggtattaactaagttatatgagagaaaat 22732947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 22206576 - 22206520
Alignment:
Q  666 attaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||    
T  22206576 attaactacgtcttcaattgc-attaaaagtgtgttattcgttttcaattagcattaa 22206520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 458 - 519
Target Start/End: Original strand, 23142374 - 23142435
Alignment:
Q  458 aattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaa 519  Q
    ||||||||||||| ||||||||||||||| ||||| |||||| |||||||||  ||||||||    
T  23142374 aattgcattaaaagtgtgttattcgttttcaattagcattaactaagttatatcagagaaaa 23142435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 715
Target Start/End: Complemental strand, 22733025 - 22732976
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaatt 715  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  22733025 cattaactacgttttcaattgc-attaaaagtgtgttattcgttttcaatt 22732976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 723
Target Start/End: Original strand, 23142379 - 23142415
Alignment:
Q  687 cattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||||||||||||||||| ||||||||||||    
T  23142379 cattaaaagtgtgttattcgttttcaattagcattaa 23142415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 22202805 - 22202748
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||| |  |||||||| ||||||||||||||||||||||| | ||||||||||    
T  22202805 cattaactacatattcaattgc-attaaaagtgtgttattcgttttcatttagcattaa 22202748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 504
Target Start/End: Complemental strand, 22202792 - 22202743
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaag 504  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||| ||||    
T  22202792 ttcaattgcattaaaagtgtgttattcgttttcatttagcattaactaag 22202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 50938978 - 50939019
Alignment:
Q  6 tggacatcatcaacagcatcacaatttccattatgtgtcaat 47  Q
    ||||||||||||||| |||||||||| ||||| |||||||||    
T  50938978 tggacatcatcaacaacatcacaattaccattctgtgtcaat 50939019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 1998120 - 1998185
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| ||||||||||    
T  1998120 ttcaattgcattaaaagtgtgttattcgttttcaattagcattaactaagttatatgagagaaaat 1998185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 14988207 - 14988163
Alignment:
Q  139 tctatttgtaataattactattcattgcagccataaaagcaatta 183  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  14988207 tctattggtaataattactattcattgcagccataaaagcaatta 14988163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 723
Target Start/End: Original strand, 1998128 - 1998164
Alignment:
Q  687 cattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||||||||||||||||| ||||||||||||    
T  1998128 cattaaaagtgtgttattcgttttcaattagcattaa 1998164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 19040454 - 19040519
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| ||||||||||    
T  19040454 ttcaattgcattaaaagtgtgttattcgttttcaattagcattaactaagttatatgagagaaaat 19040519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 19040748 - 19040813
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| ||||||||||    
T  19040748 ttcaattgcattaaaagtgtgttattcgttttcaattagcattaactaagttatatgagagaaaat 19040813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 723
Target Start/End: Original strand, 19040444 - 19040498
Alignment:
Q  668 taactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||    
T  19040444 taactacgtcttcaattgc-attaaaagtgtgttattcgttttcaattagcattaa 19040498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 723
Target Start/End: Original strand, 19040738 - 19040792
Alignment:
Q  668 taactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||    
T  19040738 taactacgtcttcaattgc-attaaaagtgtgttattcgttttcaattagcattaa 19040792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 455 - 499
Target Start/End: Original strand, 19040571 - 19040615
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaa 499  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||    
T  19040571 ttcaattgcattaaaagtgtgttattcgttttcaattgacattaa 19040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 23759560 - 23759492
Alignment:
Q  455 ttcaattgcattaaaaatgtgtt---attcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||   ||||||||| ||||  |||||| ||||||||| ||||||||||    
T  23759560 ttcaattgcattaaaagtgtgttgttattcgttttcaattggcattaactaagttatatgagagaaaat 23759492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 406815 - 406759
Alignment:
Q  666 attaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  406815 attaactacgttttcaattgc-attaaaagtgtgttattcgttttcaattagcattaa 406759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 406807 - 406759
Alignment:
Q  451 cgttttcaattgcattaaaaatgtgttattcgtttttaattaacattaa 499  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  406807 cgttttcaattgcattaaaagtgtgttattcgttttcaattagcattaa 406759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 732 - 777
Target Start/End: Original strand, 8500002 - 8500047
Alignment:
Q  732 atgcataattactattcgttatataccgttaatgagcaataagttt 777  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8500002 atgcataattactattcattatataccgttaatgagcaataagttt 8500047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 30340401 - 30340466
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||| ||| ||||||||||||||| |||| ||||||||||| ||||| ||||||||||    
T  30340401 ttcaattgcattcaaagtgtgttattcgttttcaattgacattaattaaattatatgagagaaaat 30340466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 8499856 - 8499899
Alignment:
Q  141 tatttgtaataattactattcattgcagccataaaagcaattag 184  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  8499856 tattggtaataattactattcattgcagccataaaagcaattag 8499899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 8498383 - 8498424
Alignment:
Q  6 tggacatcatcaacagcatcacaatttccattatgtgtcaat 47  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  8498383 tggacatcatcaacagcatcacaatttccattatgtatcaat 8498424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 8500506 - 8500574
Alignment:
Q  449 ttcgttttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaa 517  Q
    ||||| |||||||||||||||  |||||||| |||||| ||||| | |||| ||||||||| |||||||    
T  8500506 ttcgtcttcaattgcattaaacgtgtgttatacgttttcaattagcgttaactaagttatatgagagaa 8500574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 517
Target Start/End: Original strand, 8500696 - 8500758
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaa 517  Q
    |||||||||||||||| ||| |||| |||||| ||||| |||||| | ||||||| |||||||    
T  8500696 ttcaattgcattaaaagtgtattatacgttttcaattagcattaacttagttatatgagagaa 8500758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 8499970 - 8500019
Alignment:
Q  214 gcatgatgcttgctaatgccctttgacccgtgatgcataattactattca 263  Q
    |||| ||||||| ||||||| |||||||| | ||||||||||||||||||    
T  8499970 gcataatgcttggtaatgccttttgacccataatgcataattactattca 8500019  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 520
Target Start/End: Original strand, 48608711 - 48608776
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||| ||||||||| ||||||||||    
T  48608711 ttcaattgcattaaaagtgtgttattcgttttcaatttgcattaactaagttatatgagagaaaat 48608776  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 499
Target Start/End: Original strand, 33816002 - 33816046
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaa 499  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    
T  33816002 ttcaattgcattaaaaatgtgttattcgttttcaattgacattaa 33816046  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 723
Target Start/End: Original strand, 48608698 - 48608755
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||    
T  48608698 cattaactacgtcttcaattgc-attaaaagtgtgttattcgttttcaatttgcattaa 48608755  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 9793019 - 9792954
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||| ||||||||| |||| |||||    
T  9793019 ttcaattgcattaaaagtgtgttattcgttttcaattggcattaactaagttatatgagaaaaaat 9792954  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 43783286 - 43783221
Alignment:
Q  455 ttcaattgcattaaaaatgtgttattcgtttttaattaacattaattaagttataggagagaaaat 520  Q
    |||||||||||||||| |||||||||| |||| ||||  |||||| ||||||||| ||||||||||    
T  43783286 ttcaattgcattaaaagtgtgttattcattttcaattggcattaactaagttatatgagagaaaat 43783221  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 9793032 - 9792975
Alignment:
Q  665 cattaactacgttctcaattgccattaaaagtgtgttattcgttttaaattagcattaa 723  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||    
T  9793032 cattaactacgtattcaattgc-attaaaagtgtgttattcgttttcaattggcattaa 9792975  T

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