View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_high_7 (Length: 768)
Name: NF3929_high_7
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 661; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 7 - 732
Target Start/End: Complemental strand, 37201982 - 37201261
Alignment:
| Q |
7 |
tagattatactcataggagagaaagagagcataggaatacacattgagataaaagctcattaaggaatcatatattatagattgataaaagatattgaat |
106 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201982 |
tagatcatactcacaggagagaaagagagcataggaatacacattgagataaaagctcattaaggaatcatatattatagattgataaaagatattgaat |
37201883 |
T |
|
| Q |
107 |
tatgtacacaatagtgttagtgttattaatagaacccagctgcacaactaattgagtaactaactcctaactaattccaaattgactaacaataacaaaa |
206 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201882 |
tttgtacacaataatgttagtgttattaatagaacccagctgcacaactaattgagtaactaactcctaactaattccaaattgactaacaataacaaaa |
37201783 |
T |
|
| Q |
207 |
ctctaactatcctagcatgttctacaccttggactgcagtcgcagagtgactgttgtctactgtagttttctattatgcaatggttacgattacatagta |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201782 |
ctctaactatcctagcatgtgctacaccttggactgcagtcgcagagtgactgttgtctattgtagttttctattatgcaatggttacgattacatagta |
37201683 |
T |
|
| Q |
307 |
caaaactttgtttaattattgtagtcaagattacaggtttaccttaatctgtcgccccccgcaccctctaccccctcctagttgtatcacaactaacaaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37201682 |
caaaactttgtttaattattgtagtcaagattacaggtctaccttaatctgtcgccccccgcaccctctatcccctcctagttgtatcacaactaacaaa |
37201583 |
T |
|
| Q |
407 |
tggaccaagcccaaagggcaggggctcttgctttactcactccgtccgctttgctactattaaagatagtagtttttggtacttagtggtggtgcctata |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201582 |
tggaccaagcccaaagggcaggggctcttgctttactcactccgtccgctttgctactattagagatagtagtttttggtacttagtggtggtgcctata |
37201483 |
T |
|
| Q |
507 |
tatagatgtaatcacctcataaaaaggtcaattttctcatttgcaatattactcattcattaccatcaaaacaaaagttttctaactttctctcaacttc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37201482 |
tatagatgtaatcacctcataaaaaggtcaattttctcatttgcaatattact----cattaccatcaatacaaaagttttctaactttctctcaacttc |
37201387 |
T |
|
| Q |
607 |
atctatggaatataacacattcagtcctagatatacttattgacaaaatctaaaatcaaaataagcaacaatgtgtgctaatgtgctatttcataaaccc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37201386 |
atctatggaatataacacattcagtcctagatatacttattgacaaaatctaaaatcagaataagcaacaatgtgtactaatgtgctatttcataaaccc |
37201287 |
T |
|
| Q |
707 |
actttacagaaagtacaaaatcccca |
732 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37201286 |
actttacagaaagtacaaaatcccca |
37201261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 5209145 - 5209109
Alignment:
| Q |
161 |
agtaactaactcctaactaattccaaattgactaaca |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5209145 |
agtaattaactcctaactaattccaaattgactaaca |
5209109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 48090533 - 48090478
Alignment:
| Q |
468 |
aaagatagtagtttttggtacttagtggtggtgcctatatatagatgtaatcacctcat |
526 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48090533 |
aaagatagtagtaactggtacttagtggtg---cctatatatagatgtaatcacctcat |
48090478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 2743531 - 2743485
Alignment:
| Q |
382 |
tcctagttgtatcacaactaacaaatggaccaagcccaaagggcagg |
428 |
Q |
| |
|
||||||||||| | |||| ||||||||| |||||||||||||||||| |
|
|
| T |
2743531 |
tcctagttgtaacccaacaaacaaatgggccaagcccaaagggcagg |
2743485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 15846712 - 15846753
Alignment:
| Q |
268 |
tgtagttttctattatgcaatggttacgattacatagtacaa |
309 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
15846712 |
tgtaattttctattatgcaatgcttaagattacatagtacaa |
15846753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University