View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_84 (Length: 250)
Name: NF3929_high_84
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_84 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 26209226 - 26209467
Alignment:
| Q |
9 |
agcacagagtcaacatttgaggttgatcggttgcaatccagtgccttttctacatctcctaatctgcattaaaatttgcaattctataagctataaatta |
108 |
Q |
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| T |
26209226 |
agcacagagtcaacatttgaggttgatcggttgcaatccagtgccttttctacatctcctaatctgcattaaaatttgcaattctataagctataaatta |
26209325 |
T |
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| Q |
109 |
aacaaacacaatgtcatatccaatgtnnnnnnntatcttagtgcgatttgagctgagacatcaagacttttgcaattctatagcttatggcatgtccaca |
208 |
Q |
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| T |
26209326 |
aacaaacacaatgtcatatccaatgtaaaaaaatatctgagtgcgatttgagctgagacatcaaaactttttcaattttatagcttatggcatgtccaca |
26209425 |
T |
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| Q |
209 |
agctgttttcagattattcgcatacacacttcatgatagctt |
250 |
Q |
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| T |
26209426 |
agctgttttcagattattcgcataaacacttcatgatagctt |
26209467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 12477281 - 12477341
Alignment:
| Q |
190 |
agcttatggcatgtccacaagctgttttcagattattcgcatacacacttcatgatagctt |
250 |
Q |
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| T |
12477281 |
agcttatgacatgtccataagttgttttcagcttatttccatacactctccatgatagctt |
12477341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 26184824 - 26184788
Alignment:
| Q |
190 |
agcttatggcatgtccacaagctgttttcagattatt |
226 |
Q |
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| T |
26184824 |
agcttatgacatgtccataagctgttttcagattatt |
26184788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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